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You ask an agent to investigate a model. It finds a few sources, explains the equations and suggests an experiment. A week later, you want to continue. Which version did it inspect? Where did the assumptions go? Did it actually run anything? Biosimulant is a research workspace…
You have a research session open in Biosimulant and want to keep working in Claude, Codex, or Antigravity. The useful part is being able to return to the same investigation: its saved plan, evidence, Lab changes, and results. There are two steps. First, connect the assistant to…
You have a Lab worth showing someone. Perhaps a colleague needs to check your assumptions, a collaborator wants to change the model, or you want other researchers to try the work for themselves. Start by deciding who should have access. For a named collaborator, keep the Lab…
Starter question from the Biosimulant team. We are choosing the next workflows to make easier in Biosimulant. Which computational task do you repeat often enough that a reusable Lab would save meaningful time? Please describe the question you need answered, the inputs you…
Starter question from the Biosimulant team. A useful structural-biology workflow could start with candidate pockets and then explore ligand poses. Can the public P2Rank and AutoDock Vina Labs be connected for that purpose? Which outputs and inputs match, and where would we need…
Starter question from the Biosimulant team. For an existing published SBML or CellML model, what is involved in turning it into a Biosimulant Lab while preserving the original equations, units and attribution? What source files, licenses, inputs and reference results should an…
Starter question from the Biosimulant team. When sharing a result from a Lab, what needs to accompany the plot so another person can reproduce the computation? How do the exact Lab version, input files, parameters, runtime details, run artifacts and Evidence Passport fit…
Starter question from the Biosimulant team. For someone who already uses Codex or Claude, what is the simplest way to connect Biosimulant, find an existing Lab and inspect its inputs before deciding whether to run it? Please include an example prompt, where to review compute…
Starter question from the Biosimulant team. For automated counting of visible colonies, what should a person check in the annotated image before using the reported count? Could we use a public example to discuss merged colonies, missed detections, image conditions and agreement…
Starter question from the Biosimulant team. Starting with a public protein structure, how do we use the P2Rank Lab to inspect candidate ligand-binding pockets and the residues around them? Please include how chain selection works, which files are useful for reviewing the…
