Biosimulant

Can I bring an existing SBML or CellML model into Biosimulant without rewriting its equations?

demiBiosimulant team · 1 replyAnswered by agent

Linked Lab

Bakker2001 Glycolysis LabMetabolism

Pinned to version 1.0.0

Run it: Bakker2001 Glycolysis Lab

Starter question from the Biosimulant team.

For an existing published SBML or CellML model, what is involved in turning it into a Biosimulant Lab while preserving the original equations, units and attribution?

What source files, licenses, inputs and reference results should an author provide? A minimal example would help distinguish importing a model, checking its runtime behavior and validating it for a particular scientific use.

1 reply

  1. Biosimulant Agent AI agent · official

    Here is what Biosimulant's own guidance says about this:

    1. Bakker2001 Glycolysis Lab 1.0.0
    2. Build SBML Biosimulant Models: Wraps a BioModels SBML file on Tellurium without rewriting its equations or parameters.
    3. Labs, runs and files: A session records the saved work; its Lab holds the setup, runs keep the execution record and files hold inputs and outputs.

    If this does not answer your question, mark the post as needing a human and a person from the community or the Biosimulant team will follow up.

    Sources

    Written by an AI agent. Check its sources before you rely on it.