124 of 2,078 results

Aldosterone

Guyton et al. 1972

demi/guyton1972-aldosterone

Two-model lab for Guyton1972 Aldosterone: a core SBML simulator wired into a dedicated visualization sub-model that turns the raw state into friendly timeseries and a plain-language summary. This a model from the article: Circulation: overall regulation. It can be used to explore cardiac dynamics and compare response patterns across conditions.

Updated Jun 20263 modelsscenariostimulussbml

True And Apparent Inhibition Of Amyloid Fribril Formation

Martins et al. 2013

demi/martins2013-true-and-apparent-inhibition-of-amyloid-fri-bae7dd83

Martins2013 - True and apparent inhibition ofamyloid fribril formation This model is described in the article: True and apparent inhibition of amyloid fibril formation. It can be used to explore systemsbiology martins2013 true and apparent inhibition dynamics and compare simulation behavior across conditions.

Updated Jun 20262 modelssbmlbiomodels_ebifaithful

Threonine Synthesis

Chassagnole et al. 2001

demi/chassagnole2001-threonine-synthesis

. It can be used to explore systemsbiology chassagnole2001 threonine synthesis BioModels0000000066 dynamics and compare simulation behavior across conditions.

Updated Jun 20262 modelssbmlbiomodels_ebifaithful

Physiome modularmassact - Primer Modular Mass Action Modelling Cellml

demi/physiomemodularmassact-primer-modular-mass-action-model-7923b7f5

Source-faithful physiology lab for A Primer on Modular Mass Action Modelling with CellML. Public controls and outputs are mapped to real source symbols for source-model physiology.

Updated Jun 20262 modelscellmlphysiomefaithful

Gomez Cabrero2011 Atherogenesis

demi/gomez-cabrero2011-atherogenesis

This model is from the article: Workflow for generating competing hypothesis from models with parameter uncertainty. David Gomez-Cabrero, Albert Compte and Jesper Tegner Interface Focus 6 June 2011 vo.

Updated Jun 20262 modelssystemsbiologysbmlbiomodels_ebi

Vortex Dynamics Three Dimensional Continuous Myocardium

Fenton et al. 2006

demi/fenton2006-vortex-dynamics-three-dimensional-continuous-68b76ec1

Source-faithful physiology lab for Fenton, Karma, 2006. Public controls and outputs are mapped to real source symbols for electrophysiology.

Updated Jun 20262 modelscellmlphysiomefaithful

Endomesodermnetwork

Kuhn et al. 2009

demi/kuhn2009-endomesodermnetwork

This a model from the article: Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network. Kühn C, Wierling C, Kühn A, Klipp E, Panopoulou G, Lehrach H, Poustka AJ.

Updated Jun 20262 modelssbmlbiomodels_ebifaithful

Calciumwave Ip3diffusion

Sneyd et al. 1995

demi/sneyd1995-calciumwave-ip3diffusion

This a model from the article: Intercellular calcium waves mediated by diffusion of inositol trisphosphate: atwo-dimensional model. Sneyd J, Wetton BT, Charles AC, Sanderson MJ.

Updated Jun 20262 modelssystemsbiologysbmlbiomodels_ebi

Ajay_Bhalla_2007_Bistable

demi/ajay-bhalla-2007-bistable

Clean Biosimulant lab for systems signaling model: Ajay_Bhalla_2007_Bistable. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Updated Jun 20262 modelssystemssystems-biologysbml

Persistence analysis in a Kolmogorov-type model for cancer-immune system competition

Bianca et al. 2013

demi/bianca2013-persistence-analysis-in-a-kolmogorov-type-model

Persistence analysis in a Kolmogorov-type model for cancer-immune system competitionAIP Conference Proceedings 1558, 1797 (2013); https://doi.org/10.1063/1.4825874C. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.

Updated Jun 20262 modelssbmlbiomodels_ebifaithful

Mapk Allrandomelementary

Markevich et al. 2004

demi/markevich2004-mapk-allrandomelementary

This model originates from BioModels Database: A Database of Annotated Published Models. It is copyright (c) 2005-2009 The BioModels Team.

Updated Jun 20262 modelssystemsbiologysbmlbiomodels_ebi

Ca Oscillation Dpdnt Nfat Dynamics

Fisher et al. 2006

demi/fisher2006-ca-oscillation-dpdnt-nfat-dynamics

The model reproduces the calcium oscillation dependent activation-deactivation kinetics of nuclear factor of activated T cells (NFAT) as depicted in Fig 4a of the paper. It can be used to explore systemsbiology fisher2006 ca oscillation dpdnt nfat dynamics and compare simulation behavior across conditions.

Updated Jun 20262 modelsphysiologysystemsbiologysbml

transmission dynamics of dengue in the presence of Wolbachia

Ndii et al. 2015

demi/ndii2015-dengue-wolbachia

Single-model lab wrapper for Ndii2015-transmission dynamics of dengue in the presence of Wolbachia.. Use of the bacterium Wolbachia is an innovative new strategy designed to break the cycle of dengue transmission. There are two main mechanisms by which Wolbachia could achieve this: by reducing the le.

Updated Jun 20262 modelsbiomodels_ebicuratedfaithful

Neumann2010_CD95Stimulation_NFkB_Apoptosis

demi/neumann2010-cd95stimulation-nfkb-apoptosis

Clean Biosimulant lab for NF-kB pathway signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Updated Jun 20262 modelssystemssystems-biologysbml

C-Glucose Standalone Glycolysis

Kerkhoven et al. 2013

demi/kerkhoven2013-glycolysis-and-pentose-phosphate-pathway-093c38b2

Kerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei -MODEL C (with glucosomal ribokinase) There are six models (Model A, B, C, C-fruc, D, D-fruc) described in the paper. It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.

Updated Jun 20262 modelsbiomodels_ebifaithfulode

Virus-macrophage-tumour interactions in oncolytic viral therapies

Almuallem et al. 2020

demi/almuallem2020-virus-macrophage-tumour-interactions-in-o-78e115fe

This mathematical model of the role of the innate immune responses generated by macrophages in the context of anti-tumour oncolytic viral therapies is described in the publication:Nada Almuallem, Dumi. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.

Updated Jun 20262 modelssbmlbiomodels_ebifaithful

Glycolysis in S.cerevisiae - Iteration 10

Smallbone et al. 2013

demi/smallbone2013-glycolysis-in-s-cerevisiae-iteration-10

Smallbone2013 - Glycolysis in S.cerevisiae - Iteration 10 This model is described in the article: A model of yeast glycolysis based on a consistent kinetic characterization of all its enzymes Kieran S. It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.

Updated Jun 20262 modelsbiomodels_ebifaithfulode

Evidence That Calcium Release Activated Current Mediates

Mears et al. 1997

demi/mears1997-evidence-that-calcium-release-activated-curre-2418a916

Source-faithful physiology lab for Mears 1997. Public controls and outputs are mapped to real source symbols for electrophysiology.

Updated Jun 20262 modelscellmlphysiomefaithful

Typebtrichothecenes

Ueda et al. 2001

demi/ueda2001-typebtrichothecenes

This a model from the article: Critical study of and improvements in chromatographic methods for the analysisof type B trichothecenes. Mateo JJ, Llorens A, Mateo R, Jimenez M.

Updated Jun 20262 modelssbmlbiomodels_ebifaithful

Nyman2012_InsulinSignalling

demi/nyman2012-insulinsignalling

Clean Biosimulant lab for metabolic and hormone-linked signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Updated Jun 20262 modelssystemssystems-biologysbml

MODEL1704110003 Variant Proctor2017 Identifying Microrna For Muscle Regeneration During Ageing 3

demi/proctor2017-identifying-microrna-for-muscle-regeneratio-864d1517

Proctor2017 - Identifying microRNA for muscleregeneration during ageing (Mir143_in_muscle) This model is described in the article: Using computer simulation models to investigate the most promising mi. It can be used to explore systemsbiology proctor2017 identifying microrna for muscle dynamics and compare simulation behavior across conditions.

Updated Jun 20262 modelsphysiologysystemsbiologysbml

Geißert2020 - Yersinia enterocolitica co-infection in mice

demi/gei-ert2020-yersinia-enterocolitica-co-infection-in-mice

This model simulates the colonization of the mouse gut with different strains of Yersinia enterocolitica. Thereby it takes the host-immune repsone into account.

Updated Jun 20262 modelssbmlbiomodels_ebifaithful

Beuckelmann Mathematical Human Ventricular Myocytes

Priebe et al. 1998

demi/priebe1998-beuckelmann-mathematical-human-ventricular-myocytes

Source-faithful physiology lab for Priebe, Beuckelmann, 1998. Public controls and outputs are mapped to real source symbols for electrophysiology.

Updated Jun 20262 modelscellmlphysiomefaithful

A Validated Mathematical Model of Tumor Growth Including Tumor-Host Interaction and Cell-Mediated Immune Response

Lopez et al. 2014

demi/lopez2014-a-validated-mathematical-model-of-tumor-growth

This is a dynamical model of cancer growth that includes three interacting cell populations of tumor cells, healthy host cells and immune effector cells. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.

Updated Jun 20262 modelssbmlbiomodels_ebifaithful

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