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This a model from the article: Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network. Kühn C, Wierling C, Kühn A, Klipp E, Panopoulou G, Lehrach H, Poustka AJ.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_mrna_p_vegfr",
"label": "Initial MRNA P Vegfr",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.initial_mrna_p_vegfr",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mRNA_P_VEGFR`."
},
{
"name": "initial_mrna_m_vegfr",
"label": "Initial MRNA M Vegfr",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.initial_mrna_m_vegfr",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mRNA_M_VEGFR`."
},
{
"name": "initial_mrna_e_vegfr",
"label": "Initial MRNA E Vegfr",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.initial_mrna_e_vegfr",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `mRNA_E_VEGFR`."
},
{
"name": "initial_protein_p_vegf_signal",
"label": "Initial Protein P Vegf Signal",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.initial_protein_p_vegf_signal",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PROTEIN_P_VEGFSignal`."
},
{
"name": "initial_protein_p_vegfr",
"label": "Initial Protein P Vegfr",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.initial_protein_p_vegfr",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PROTEIN_P_VEGFR`."
},
{
"name": "initial_protein_m_vegf_signal",
"label": "Initial Protein M Vegf Signal",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.initial_protein_m_vegf_signal",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PROTEIN_M_VEGFSignal`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.species_labels"
},
{
"name": "mrna_p_vegfr",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.mrna_p_vegfr"
},
{
"name": "mrna_m_vegfr",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.mrna_m_vegfr"
},
{
"name": "mrna_e_vegfr",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.mrna_e_vegfr"
},
{
"name": "protein_p_vegf_signal",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.protein_p_vegf_signal"
},
{
"name": "protein_p_vegfr",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.protein_p_vegfr"
},
{
"name": "protein_m_vegf_signal",
"maps_to": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.protein_m_vegf_signal"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Kuhn2009 Endomesodermnetwork Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model_state"
],
"from": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model_summary"
],
"from": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model_species_labels"
],
"from": "systemsbiology_sbml_kuhn2009_endomesodermnetwork_biomd0000000235_model.species_labels"
}
],
"package": "kuhn2009-endomesodermnetwork",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This a model from the article: Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network. Kühn C, Wierling C, Kühn A, Klipp E, Panopoulou G, Lehrach H, Poustka AJ.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagekuhn2009-endomesodermnetwork
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother
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