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This model is from the article: Workflow for generating competing hypothesis from models with parameter uncertainty. David Gomez-Cabrero, Albert Compte and Jesper Tegner Interface Focus 6 June 2011 vo.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_sum_rec_bcells",
"label": "Initial Sum Rec Bcells",
"maps_to": "systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model.initial_sum_rec_bcells",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_14`."
},
{
"name": "initial_bcells",
"label": "Initial Bcells",
"maps_to": "systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model.initial_bcells",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_8`."
},
{
"name": "initial_ldl_blood",
"label": "Initial Ldl Blood",
"maps_to": "systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model.initial_ldl_blood",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_16`."
},
{
"name": "initial_hdl_blood",
"label": "Initial Hdl Blood",
"maps_to": "systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model.initial_hdl_blood",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_15`."
},
{
"name": "initial_sigmoid_acten_dinh",
"label": "Initial Sigmoid Acten Dinh",
"maps_to": "systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model.initial_sigmoid_acten_dinh",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_19`."
},
{
"name": "initial_sigmoid_acten_dstim",
"label": "Initial Sigmoid Acten Dstim",
"maps_to": "systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model.initial_sigmoid_acten_dstim",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_18`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model.species_labels"
},
{
"name": "sum_rec_bcells",
"maps_to": "systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model.sum_rec_bcells"
},
{
"name": "bcells",
"maps_to": "systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model.bcells"
},
{
"name": "ldl_blood",
"maps_to": "systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model.ldl_blood"
},
{
"name": "hdl_blood",
"maps_to": "systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model.hdl_blood"
},
{
"name": "sigmoid_acten_dinh",
"maps_to": "systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model.sigmoid_acten_dinh"
},
{
"name": "sigmoid_acten_dstim",
"maps_to": "systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model.sigmoid_acten_dstim"
}
]
},
"tags": [
"generegulation",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Gomez Cabrero2011 Atherogenesis Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model_state"
],
"from": "systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model_summary"
],
"from": "systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model_species_labels"
],
"from": "systemsbiology_sbml_gomez_cabrero2011_atherogenesis_model1002160000_model.species_labels"
}
],
"package": "gomez-cabrero2011-atherogenesis",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This model is from the article: Workflow for generating competing hypothesis from models with parameter uncertainty. David Gomez-Cabrero, Albert Compte and Jesper Tegner Interface Focus 6 June 2011 vo.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagegomez-cabrero2011-atherogenesis
Created2026-05-17
Updated2026-06-13
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother
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