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Source-faithful physiology lab for A Primer on Modular Mass Action Modelling with CellML. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_cformation_a",
"label": "Initial Cformation A",
"maps_to": "physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model.initial_cformation_a",
"description": "Initial value for Cformation A. Maps to source symbol `A`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"uM"
]
},
{
"name": "initial_cformation_b",
"label": "Initial Cformation B",
"maps_to": "physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model.initial_cformation_b",
"description": "Initial value for Cformation B. Maps to source symbol `B`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"uM"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model.variable_labels"
},
{
"name": "cformation_a",
"label": "Cformation A",
"maps_to": "physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model.cformation_a",
"description": "Cformation A. Maps to source symbol `A`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "cformation_b",
"label": "Cformation B",
"maps_to": "physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model.cformation_b",
"description": "Cformation B. Maps to source symbol `B`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "eformation_d",
"label": "Eformation D",
"maps_to": "physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model.eformation_d",
"description": "Eformation D. Maps to source symbol `D`. Units: per_um2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "eformation_e",
"label": "Eformation E",
"maps_to": "physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model.eformation_e",
"description": "Eformation E. Maps to source symbol `E`. Units: per_um2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "model_state_c",
"label": "Model State C (source C)",
"maps_to": "physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model.model_state_c",
"description": "Model State C (source C). Maps to source symbol `C`. Units: uM. Naming evidence: source symbol is too ambiguous for a stronger public label."
},
{
"name": "cformation_j1",
"label": "Cformation J1",
"maps_to": "physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model.cformation_j1",
"description": "Cformation J1. Maps to source symbol `J1`. Units: uM_per_s. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Physiome modularmassact - Primer Modular Mass Action Modelling Cellml Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model",
"parameters": {
"model_path": "data/BestPractice_Cdecoupled.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model_state"
],
"from": "physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model.state"
},
{
"to": [
"visualisation.physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model_summary"
],
"from": "physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model_trajectory"
],
"from": "physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model_variable_labels"
],
"from": "physiology_cellml_a_primer_on_modular_mass_action_modelling_with_c_modularmassactionprimer_model.variable_labels"
}
],
"package": "physiomemodularmassact-primer-modular-mass-action-model-7923b7f5",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for A Primer on Modular Mass Action Modelling with CellML. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagephysiomemodularmassact-primer-modular-mass-action-model-7923b7f5
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother
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