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Source-faithful physiology lab for Priebe, Beuckelmann, 1998. Public controls and outputs are mapped to real source symbols for electrophysiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_calcium_d_gate",
"label": "Initial Calcium D Gate",
"maps_to": "physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model.initial_calcium_d_gate",
"description": "Initial value for Calcium D Gate. Maps to source symbol `d`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_calcium_f_gate",
"label": "Initial Calcium F Gate",
"maps_to": "physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model.initial_calcium_f_gate",
"description": "Initial value for Calcium F Gate. Maps to source symbol `f`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model.variable_labels"
},
{
"name": "calcium_d_gate",
"label": "Calcium D Gate",
"maps_to": "physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model.calcium_d_gate",
"description": "Calcium D Gate. Maps to source symbol `d`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "calcium_f_gate",
"label": "Calcium F Gate",
"maps_to": "physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model.calcium_f_gate",
"description": "Calcium F Gate. Maps to source symbol `f`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_calcium",
"label": "Intracellular Calcium",
"maps_to": "physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model.intracellular_calcium",
"description": "Intracellular Calcium. Maps to source symbol `Cai`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_sodium",
"label": "Intracellular Sodium",
"maps_to": "physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model.intracellular_sodium",
"description": "Intracellular Sodium. Maps to source symbol `Nai`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_h_gate",
"label": "Sodium H Gate",
"maps_to": "physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model.sodium_h_gate",
"description": "Sodium H Gate. Maps to source symbol `h`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_j_gate",
"label": "Sodium J Gate",
"maps_to": "physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model.sodium_j_gate",
"description": "Sodium J Gate. Maps to source symbol `j`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Priebe1998 - Beuckelmann Mathematical Human Ventricular Myocytes Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model",
"parameters": {
"model_path": "data/priebe_beuckelmann_1998.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model_state"
],
"from": "physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model.state"
},
{
"to": [
"visualisation.physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model_summary"
],
"from": "physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model_trajectory"
],
"from": "physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model_variable_labels"
],
"from": "physiology_cellml_priebe_beuckelmann_1998_priebebeuckelmann1998_model.variable_labels"
}
],
"package": "priebe1998-beuckelmann-mathematical-human-ventricular-myocytes",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Priebe, Beuckelmann, 1998. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagepriebe1998-beuckelmann-mathematical-human-ventricular-myocytes
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother
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