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Clean Biosimulant lab for NF-kB pathway signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_source_defined_l_state",
"label": "Initial source-defined L state",
"maps_to": "signaling_sbml_neumann2010_cd95stimulation_nfkb_apoptosis_biomd0000000243_model.initial_source_defined_l_state",
"description": "Initial level of source-defined L state. Maps to SBML symbol `L`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "nf_k_b_ik_b",
"label": "NF K B Ik B",
"maps_to": "signaling_sbml_neumann2010_cd95stimulation_nfkb_apoptosis_biomd0000000243_model.nf_k_b_ik_b",
"description": "NF K B Ik B. Maps to SBML symbol `NF_kB_IkB` and is emitted in native SBML units."
},
{
"name": "nf_k_b_ik_b_p",
"label": "NF K B Ik B P",
"maps_to": "signaling_sbml_neumann2010_cd95stimulation_nfkb_apoptosis_biomd0000000243_model.nf_k_b_ik_b_p",
"description": "NF K B Ik B P. Maps to SBML symbol `NF_kB_IkB_P` and is emitted in native SBML units."
},
{
"name": "nfkb",
"label": "NF-kB",
"maps_to": "signaling_sbml_neumann2010_cd95stimulation_nfkb_apoptosis_biomd0000000243_model.nfkb",
"description": "NF-kB. Maps to SBML symbol `NF_kB_star` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_neumann2010_cd95stimulation_nfkb_apoptosis_biomd0000000243_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_neumann2010_cd95stimulation_nfkb_apoptosis_biomd0000000243_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_neumann2010_cd95stimulation_nfkb_apoptosis_biomd0000000243_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"nfkb",
"apoptosis"
],
"title": "Neumann2010_CD95Stimulation_NFkB_Apoptosis Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_neumann2010_cd95stimulation_nfkb_apoptosis_biomd0000000243_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_neumann2010_cd95stimulation_nfkb_apoptosis_biomd0000000243_model_state"
],
"from": "signaling_sbml_neumann2010_cd95stimulation_nfkb_apoptosis_biomd0000000243_model.state"
},
{
"to": [
"visualisation.signaling_sbml_neumann2010_cd95stimulation_nfkb_apoptosis_biomd0000000243_model_summary"
],
"from": "signaling_sbml_neumann2010_cd95stimulation_nfkb_apoptosis_biomd0000000243_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_neumann2010_cd95stimulation_nfkb_apoptosis_biomd0000000243_model_species_labels"
],
"from": "signaling_sbml_neumann2010_cd95stimulation_nfkb_apoptosis_biomd0000000243_model.species_labels"
}
],
"package": "neumann2010-cd95stimulation-nfkb-apoptosis",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for NF-kB pathway signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageneumann2010-cd95stimulation-nfkb-apoptosis
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebinfkbapoptosisvisualisationother
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