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This a model from the article: Modelling sarcoplasmic reticulum calcium ATPase and its regulation in cardiacmyocytes. Koivumaki JT, Takalo J, Korhonen T, Tavi P, Weckstrom M.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_plb_dephosph",
"label": "Initial Plb Dephosph",
"maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.initial_plb_dephosph",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PLB_dephosph`."
},
{
"name": "initial_ltrpn",
"label": "Initial Ltrpn",
"maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.initial_ltrpn",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `LTRPN`."
},
{
"name": "initial_ca_serca",
"label": "Initial Ca Serca",
"maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.initial_ca_serca",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ca_serca`."
},
{
"name": "initial_ca_cyt",
"label": "Initial Ca Cyt",
"maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.initial_ca_cyt",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ca_cyt`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.species_labels"
},
{
"name": "plb_dephosph",
"maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.plb_dephosph"
},
{
"name": "ltrpn",
"maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.ltrpn"
},
{
"name": "ca_serca",
"maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.ca_serca"
},
{
"name": "ca_cyt",
"maps_to": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.ca_cyt"
}
]
},
"tags": [
"cardiovascular",
"metabolism",
"physiology",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Koivumaki2009 Sercaatpase Short Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model_state"
],
"from": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model_summary"
],
"from": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model_species_labels"
],
"from": "systemsbiology_sbml_koivumaki2009_sercaatpase_short_model1006230029_model.species_labels"
}
],
"package": "koivumaki2009-sercaatpase-short",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This a model from the article: Modelling sarcoplasmic reticulum calcium ATPase and its regulation in cardiacmyocytes. Koivumaki JT, Takalo J, Korhonen T, Tavi P, Weckstrom M.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagekoivumaki2009-sercaatpase-short
Created2026-05-17
Updated2026-06-13
cardiovascularmetabolismphysiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother