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Clean Biosimulant lab for systems signaling model: Bray1993_chemotaxis. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_aspartate_ligand",
"label": "Initial aspartate ligand",
"maps_to": "signaling_sbml_bray1993_chemotaxis_biomd0000000404_model.initial_aspartate_ligand",
"description": "Initial level of aspartate ligand. Maps to SBML symbol `asp`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_atp",
"label": "Initial ATP",
"maps_to": "signaling_sbml_bray1993_chemotaxis_biomd0000000404_model.initial_atp",
"description": "Initial level of ATP. Maps to SBML symbol `species_1`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_source_defined_ni_state",
"label": "Initial source-defined NI state",
"maps_to": "signaling_sbml_bray1993_chemotaxis_biomd0000000404_model.initial_source_defined_ni_state",
"description": "Initial level of source-defined NI state. Maps to SBML symbol `ni`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "aspartate_ligand",
"label": "aspartate ligand",
"maps_to": "signaling_sbml_bray1993_chemotaxis_biomd0000000404_model.aspartate_ligand",
"description": "aspartate ligand. Maps to SBML symbol `asp` and is emitted in native SBML units."
},
{
"name": "total_aspartate_bound_receptor",
"label": "total aspartate-bound receptor",
"maps_to": "signaling_sbml_bray1993_chemotaxis_biomd0000000404_model.total_aspartate_bound_receptor",
"description": "total aspartate-bound receptor. Maps to SBML symbol `Tasp` and is emitted in native SBML units."
},
{
"name": "total_inactive_receptor_state_ni",
"label": "total inactive receptor state Ni",
"maps_to": "signaling_sbml_bray1993_chemotaxis_biomd0000000404_model.total_inactive_receptor_state_ni",
"description": "total inactive receptor state Ni. Maps to SBML symbol `Tni` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_bray1993_chemotaxis_biomd0000000404_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_bray1993_chemotaxis_biomd0000000404_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_bray1993_chemotaxis_biomd0000000404_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"gpcr"
],
"title": "Bray1993_chemotaxis Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_bray1993_chemotaxis_biomd0000000404_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_bray1993_chemotaxis_biomd0000000404_model_state"
],
"from": "signaling_sbml_bray1993_chemotaxis_biomd0000000404_model.state"
},
{
"to": [
"visualisation.signaling_sbml_bray1993_chemotaxis_biomd0000000404_model_summary"
],
"from": "signaling_sbml_bray1993_chemotaxis_biomd0000000404_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_bray1993_chemotaxis_biomd0000000404_model_species_labels"
],
"from": "signaling_sbml_bray1993_chemotaxis_biomd0000000404_model.species_labels"
}
],
"package": "bray1993-chemotaxis",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for systems signaling model: Bray1993_chemotaxis. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebray1993-chemotaxis
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebigpcrvisualisationother