Luna2013_CircadianClock_SIRT1 Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_metabolic_pathway_state_1",
        "units": "native SBML value",
        "default": 1.54597010260715,
        "maps_to": "metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model.initial_metabolic_pathway_state_1",
        "description": "Initial condition for metabolic pathway state 1. Maps to bundled SBML symbol `species_1`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_metabolic_pathway_state_2",
        "units": "native SBML value",
        "default": 0.101793613432364,
        "maps_to": "metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model.initial_metabolic_pathway_state_2",
        "description": "Initial condition for metabolic pathway state 2. Maps to bundled SBML symbol `species_2`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_metabolic_pathway_state_3",
        "units": "native SBML value",
        "default": 0.0723157888573554,
        "maps_to": "metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model.initial_metabolic_pathway_state_3",
        "description": "Initial condition for metabolic pathway state 3. Maps to bundled SBML symbol `species_3`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_cp2",
        "units": "native SBML value",
        "default": 0.0475926846633792,
        "maps_to": "metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model.initial_cp2",
        "description": "Initial condition for cp2. Maps to bundled SBML symbol `species_4`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_nad",
        "units": "native SBML value",
        "default": 5.20806131539501,
        "maps_to": "metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model.initial_nad",
        "description": "Initial condition for nad. Maps to bundled SBML symbol `species_5`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "metabolic_pathway_state_1",
        "maps_to": "metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model.metabolic_pathway_state_1"
      },
      {
        "name": "metabolic_pathway_state_2",
        "maps_to": "metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model.metabolic_pathway_state_2"
      },
      {
        "name": "metabolic_pathway_state_3",
        "maps_to": "metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model.metabolic_pathway_state_3"
      },
      {
        "name": "cp2",
        "maps_to": "metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model.cp2"
      },
      {
        "name": "nad",
        "maps_to": "metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model.nad"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model.observable_labels"
      }
    ]
  },
  "title": "Luna2013_CircadianClock_SIRT1 Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model",
      "parameters": {
        "model_path": "data/MODEL2112310002.xml",
        "integration_step": 0.1
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model_observable_values"
      ],
      "from": "metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model_run_summary"
      ],
      "from": "metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model_observable_labels"
      ],
      "from": "metabolism_sbml_luna2013_circadianclock_sirt1_model2112310002_model.observable_labels"
    }
  ],
  "package": "luna2013-circadianclock-sirt1",
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "version": "1.0.0",
  "description": "An in silico model to examine damage-induced circadian phase shifts by investigating a possible mechanism linking circadian rhythms to metabolism. The proposed model involves two DNA damage response p.",
  "schema_version": "2.0"
}