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This a model from the article: Computational insights on the competing effects of nitric oxide in regulatingapoptosis. Bagci EZ, Vodovotz Y, Billiar TR, Ermentrout B, Bahar I.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_onoo_m",
"label": "Initial Onoo M",
"maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.initial_onoo_m",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ONOO_m`."
},
{
"name": "initial_o_2_m",
"label": "Initial O 2 M",
"maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.initial_o_2_m",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `O_2m`."
},
{
"name": "initial_no_2",
"label": "Initial No 2",
"maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.initial_no_2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NO_2`."
},
{
"name": "initial_model_state_no",
"label": "Initial Model State No",
"maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.initial_model_state_no",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NO`."
},
{
"name": "initial_n2_o3",
"label": "Initial N2 O3",
"maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.initial_n2_o3",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `N2O3`."
},
{
"name": "initial_gsno",
"label": "Initial Gsno",
"maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.initial_gsno",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `GSNO`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.species_labels"
},
{
"name": "onoo_m",
"maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.onoo_m"
},
{
"name": "o_2_m",
"maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.o_2_m"
},
{
"name": "no_2",
"maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.no_2"
},
{
"name": "model_state_no",
"maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.model_state_no"
},
{
"name": "n2_o3",
"maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.n2_o3"
},
{
"name": "gsno",
"maps_to": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.gsno"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Bagci2008 No Apoptosis Modela Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model_state"
],
"from": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model_summary"
],
"from": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model_species_labels"
],
"from": "systemsbiology_sbml_bagci2008_no_apoptosis_modela_model1006230064_model.species_labels"
}
],
"package": "bagci2008-no-apoptosis-modela",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This a model from the article: Computational insights on the competing effects of nitric oxide in regulatingapoptosis. Bagci EZ, Vodovotz Y, Billiar TR, Ermentrout B, Bahar I.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebagci2008-no-apoptosis-modela
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother