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Preparing exact examples…
Notes of the BioModels curators: The current model reproduce the figure 7, panel B of the paper. Note that there is a typo in the figure.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_na_drad",
"label": "Initial Na Drad",
"maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.initial_na_drad",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADrad`."
},
{
"name": "initial_nad_hres",
"label": "Initial Nad Hres",
"maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.initial_nad_hres",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADHres`."
},
{
"name": "initial_nadh",
"label": "Initial Nadh",
"maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.initial_nadh",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADH`."
},
{
"name": "initial_nad2",
"label": "Initial Nad2",
"maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.initial_nad2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NAD2`."
},
{
"name": "initial_model_state_nad",
"label": "Initial Model State Nad",
"maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.initial_model_state_nad",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NAD`."
},
{
"name": "initial_ar_h",
"label": "Initial Ar H",
"maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.initial_ar_h",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ArH`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.species_labels"
},
{
"name": "na_drad",
"maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.na_drad"
},
{
"name": "nad_hres",
"maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.nad_hres"
},
{
"name": "nadh",
"maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.nadh"
},
{
"name": "nad2",
"maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.nad2"
},
{
"name": "nad",
"maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.nad"
},
{
"name": "ar_h",
"maps_to": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.ar_h"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Olsen2003 Peroxidase Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model_state"
],
"from": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model_summary"
],
"from": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model_species_labels"
],
"from": "systemsbiology_sbml_olsen2003_peroxidase_biomd0000000046_model.species_labels"
}
],
"package": "olsen2003-peroxidase",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Notes of the BioModels curators: The current model reproduce the figure 7, panel B of the paper. Note that there is a typo in the figure.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageolsen2003-peroxidase
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother