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Source-faithful physiology lab for Decker 2009. Public controls and outputs are mapped to real source symbols for electrophysiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_membrane_voltage",
"label": "Initial Membrane Voltage",
"maps_to": "physiology_cellml_decker_2009_decker2009_model.initial_membrane_voltage",
"description": "Initial value for Membrane Voltage. Maps to source symbol `Vm`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"mV"
]
},
{
"name": "initial_intracellular_calcium",
"label": "Initial Intracellular Calcium",
"maps_to": "physiology_cellml_decker_2009_decker2009_model.initial_intracellular_calcium",
"description": "Initial value for Intracellular Calcium. Maps to source symbol `Ca_i`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"mM"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_decker_2009_decker2009_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_decker_2009_decker2009_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_decker_2009_decker2009_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_decker_2009_decker2009_model.variable_labels"
},
{
"name": "membrane_voltage",
"label": "Membrane Voltage",
"maps_to": "physiology_cellml_decker_2009_decker2009_model.membrane_voltage",
"description": "Membrane Voltage. Maps to source symbol `Vm`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_calcium",
"label": "Intracellular Calcium",
"maps_to": "physiology_cellml_decker_2009_decker2009_model.intracellular_calcium",
"description": "Intracellular Calcium. Maps to source symbol `Ca_i`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "intracellular_sodium",
"label": "Intracellular Sodium",
"maps_to": "physiology_cellml_decker_2009_decker2009_model.intracellular_sodium",
"description": "Intracellular Sodium. Maps to source symbol `Na_i`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_h_gate",
"label": "Sodium H Gate",
"maps_to": "physiology_cellml_decker_2009_decker2009_model.sodium_h_gate",
"description": "Sodium H Gate. Maps to source symbol `h`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_j_gate",
"label": "Sodium J Gate",
"maps_to": "physiology_cellml_decker_2009_decker2009_model.sodium_j_gate",
"description": "Sodium J Gate. Maps to source symbol `j`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_m_gate",
"label": "Sodium M Gate",
"maps_to": "physiology_cellml_decker_2009_decker2009_model.sodium_m_gate",
"description": "Sodium M Gate. Maps to source symbol `m`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Decker2009 - Properties Ionic Mechanisms Action Potential Adapt Decker2009 Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_decker_2009_decker2009_model",
"parameters": {
"model_path": "data/decker_2009.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_decker_2009_decker2009_model_state"
],
"from": "physiology_cellml_decker_2009_decker2009_model.state"
},
{
"to": [
"visualisation.physiology_cellml_decker_2009_decker2009_model_summary"
],
"from": "physiology_cellml_decker_2009_decker2009_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_decker_2009_decker2009_model_trajectory"
],
"from": "physiology_cellml_decker_2009_decker2009_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_decker_2009_decker2009_model_variable_labels"
],
"from": "physiology_cellml_decker_2009_decker2009_model.variable_labels"
}
],
"package": "decker2009-properties-ionic-mechanisms-action-potential-a3e07f4d",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Decker 2009. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagedecker2009-properties-ionic-mechanisms-action-potential-a3e07f4d
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother