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Clean Biosimulant lab for systems signaling model: Sackmann2006 - mating pheromone response pathway of S.cerevisiae. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_alpha_factor",
"label": "Initial Alpha Factor",
"maps_to": "signaling_sbml_sackmann2006_mating_pheromone_response_pathway_o_model1403040000_model.initial_alpha_factor",
"description": "Initial level of Alpha Factor. Maps to SBML symbol `P0`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_receptor_factor_complex",
"label": "Initial Receptor Factor Complex",
"maps_to": "signaling_sbml_sackmann2006_mating_pheromone_response_pathway_o_model1403040000_model.initial_receptor_factor_complex",
"description": "Initial level of Receptor Factor Complex. Maps to SBML symbol `P2`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "ste2_receptor",
"label": "Ste2 Receptor",
"maps_to": "signaling_sbml_sackmann2006_mating_pheromone_response_pathway_o_model1403040000_model.ste2_receptor",
"description": "Ste2 Receptor. Maps to SBML symbol `P1` and is emitted in native SBML units."
},
{
"name": "receptor_factor_complex",
"label": "Receptor Factor Complex",
"maps_to": "signaling_sbml_sackmann2006_mating_pheromone_response_pathway_o_model1403040000_model.receptor_factor_complex",
"description": "Receptor Factor Complex. Maps to SBML symbol `P2` and is emitted in native SBML units."
},
{
"name": "receptor_complex",
"label": "Receptor Complex",
"maps_to": "signaling_sbml_sackmann2006_mating_pheromone_response_pathway_o_model1403040000_model.receptor_complex",
"description": "Receptor Complex. Maps to SBML symbol `P3` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_sackmann2006_mating_pheromone_response_pathway_o_model1403040000_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_sackmann2006_mating_pheromone_response_pathway_o_model1403040000_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_sackmann2006_mating_pheromone_response_pathway_o_model1403040000_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cellular-signaling"
],
"title": "Sackmann2006 - mating pheromone response pathway of S.cerevisiae Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_sackmann2006_mating_pheromone_response_pathway_o_model1403040000_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_sackmann2006_mating_pheromone_response_pathway_o_model1403040000_model_state"
],
"from": "signaling_sbml_sackmann2006_mating_pheromone_response_pathway_o_model1403040000_model.state"
},
{
"to": [
"visualisation.signaling_sbml_sackmann2006_mating_pheromone_response_pathway_o_model1403040000_model_summary"
],
"from": "signaling_sbml_sackmann2006_mating_pheromone_response_pathway_o_model1403040000_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_sackmann2006_mating_pheromone_response_pathway_o_model1403040000_model_species_labels"
],
"from": "signaling_sbml_sackmann2006_mating_pheromone_response_pathway_o_model1403040000_model.species_labels"
}
],
"package": "sackmann2006-mating-pheromone-response-pathway-o",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for systems signaling model: Sackmann2006 - mating pheromone response pathway of S.cerevisiae. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagesackmann2006-mating-pheromone-response-pathway-o
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisationother