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Source-faithful physiology lab for Maurya et al. 2005. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_differentials_a",
"label": "Initial Differentials A",
"maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.initial_differentials_a",
"description": "Initial value for Differentials A. Maps to source symbol `A`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"molar"
]
},
{
"name": "initial_differentials_d",
"label": "Initial Differentials D",
"maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.initial_differentials_d",
"description": "Initial value for Differentials D. Maps to source symbol `D`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"molar"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.variable_labels"
},
{
"name": "differentials_a",
"label": "Differentials A",
"maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.differentials_a",
"description": "Differentials A. Maps to source symbol `A`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "differentials_d",
"label": "Differentials D",
"maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.differentials_d",
"description": "Differentials D. Maps to source symbol `D`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "differentials_g",
"label": "Differentials G",
"maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.differentials_g",
"description": "Differentials G. Maps to source symbol `G`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "differentials_ga",
"label": "Differentials Ga",
"maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.differentials_ga",
"description": "Differentials Ga. Maps to source symbol `GA`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "differentials_gd",
"label": "Differentials Gd",
"maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.differentials_gd",
"description": "Differentials Gd. Maps to source symbol `GD`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "differentials_gt",
"label": "Differentials Gt",
"maps_to": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.differentials_gt",
"description": "Differentials Gt. Maps to source symbol `GT`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Maurya2005 - Minimal Rom Gtpase Cycle Module Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model",
"parameters": {
"model_path": "data/maurya_2005.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model_state"
],
"from": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.state"
},
{
"to": [
"visualisation.physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model_summary"
],
"from": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model_trajectory"
],
"from": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model_variable_labels"
],
"from": "physiology_cellml_maurya_et_al_2005_mauryabornheimervenkatasubramaniansubramaniam2005_model.variable_labels"
}
],
"package": "maurya2005-minimal-rom-gtpase-cycle-module",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Maurya et al. 2005. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagemaurya2005-minimal-rom-gtpase-cycle-module
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother