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Clean Biosimulant lab for systems signaling model: Kolodkin2013 - Nuclear receptor-mediated cortisol signalling network. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_cort_degr",
"label": "Initial Cort Degr",
"maps_to": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.initial_cort_degr",
"description": "Initial level of Cort Degr. Maps to SBML symbol `s10`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_cort_added",
"label": "Initial Cort Added",
"maps_to": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.initial_cort_added",
"description": "Initial level of Cort Added. Maps to SBML symbol `CortAdded`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_cortisone",
"label": "Initial Cortisone",
"maps_to": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.initial_cortisone",
"description": "Initial level of Cortisone. Maps to SBML symbol `Cortisone`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "source_defined_s_rna_state",
"label": "source-defined S_RNA state",
"maps_to": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.source_defined_s_rna_state",
"description": "source-defined S_RNA state. Maps to SBML symbol `s28` and is emitted in native SBML units."
},
{
"name": "s_prot",
"label": "S PROT",
"maps_to": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.s_prot",
"description": "S PROT. Maps to SBML symbol `s36` and is emitted in native SBML units."
},
{
"name": "pxr_gene",
"label": "PXR GENE",
"maps_to": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.pxr_gene",
"description": "PXR GENE. Maps to SBML symbol `s46` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"gpcr",
"stress-response"
],
"title": "Kolodkin2013 - Nuclear receptor-mediated cortisol signalling network Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model_state"
],
"from": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.state"
},
{
"to": [
"visualisation.signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model_summary"
],
"from": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model_species_labels"
],
"from": "signaling_sbml_kolodkin2013_nuclear_receptor_mediated_cortisol_biomd0000000576_model.species_labels"
}
],
"package": "kolodkin2013-nuclear-receptor-mediated-cortisol",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for systems signaling model: Kolodkin2013 - Nuclear receptor-mediated cortisol signalling network. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagekolodkin2013-nuclear-receptor-mediated-cortisol
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebigpcrstress-responsevisualisationother