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Source-faithful physiology lab for Borghans 1997. Public controls and outputs are mapped to real source symbols for calcium handling.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_ca_y",
"label": "Initial Ca Y",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.initial_ca_y",
"description": "Initial value for Ca Y. Maps to source symbol `Y`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"uM"
]
},
{
"name": "initial_ca_z",
"label": "Initial Ca Z",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.initial_ca_z",
"description": "Initial value for Ca Z. Maps to source symbol `Z`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"uM"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.variable_labels"
},
{
"name": "ca_y",
"label": "Ca Y",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.ca_y",
"description": "Ca Y. Maps to source symbol `Y`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_z",
"label": "Ca Z",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.ca_z",
"description": "Ca Z. Maps to source symbol `Z`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "rho",
"label": "Rho",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.rho",
"description": "Rho. Maps to source symbol `rho`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "beta",
"label": "Beta",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.beta",
"description": "Beta. Maps to source symbol `beta`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_k",
"label": "Ca K",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.ca_k",
"description": "Ca K. Maps to source symbol `K`. Units: per_min. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "gamma",
"label": "Gamma",
"maps_to": "physiology_cellml_borghans_1997_borghans1997_model.gamma",
"description": "Gamma. Maps to source symbol `gamma`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Borghans1997 - Complex Intracellular Calcium Oscillations Theoretical Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_borghans_1997_borghans1997_model",
"parameters": {
"model_path": "data/borghans_dupont_goldbeter_1997a.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_borghans_1997_borghans1997_model_state"
],
"from": "physiology_cellml_borghans_1997_borghans1997_model.state"
},
{
"to": [
"visualisation.physiology_cellml_borghans_1997_borghans1997_model_summary"
],
"from": "physiology_cellml_borghans_1997_borghans1997_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_borghans_1997_borghans1997_model_trajectory"
],
"from": "physiology_cellml_borghans_1997_borghans1997_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_borghans_1997_borghans1997_model_variable_labels"
],
"from": "physiology_cellml_borghans_1997_borghans1997_model.variable_labels"
}
],
"package": "borghans1997-complex-intracellular-calcium-oscillations-4ffc36b2",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Borghans 1997. Public controls and outputs are mapped to real source symbols for calcium handling.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packageborghans1997-complex-intracellular-calcium-oscillations-4ffc36b2
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother