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Source-faithful physiology lab for Katsnelson, Nikitina, Chemla, Solovyova, Coirault, Lecarpentier, Markhasin, 2004. Public controls and outputs are mapped to real source symbols for calcium handling.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_ca_c",
"label": "Initial Ca C",
"maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.initial_ca_c",
"description": "Initial value for Ca C. Maps to source symbol `Ca_C`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_calcium_handling_a",
"label": "Initial Calcium Handling A",
"maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.initial_calcium_handling_a",
"description": "Initial value for Calcium Handling A. Maps to source symbol `A`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.variable_labels"
},
{
"name": "alpha_1",
"label": "Alpha 1",
"maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.alpha_1",
"description": "Alpha 1. Maps to source symbol `alpha_1`. Units: per_um. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "alpha_2",
"label": "Alpha 2",
"maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.alpha_2",
"description": "Alpha 2. Maps to source symbol `alpha_2`. Units: per_um. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "alpha_3",
"label": "Alpha 3",
"maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.alpha_3",
"description": "Alpha 3. Maps to source symbol `alpha_3`. Units: per_um. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "alpha_g",
"label": "Alpha G",
"maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.alpha_g",
"description": "Alpha G. Maps to source symbol `alpha_G`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "alpha_p",
"label": "Alpha P",
"maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.alpha_p",
"description": "Alpha P. Maps to source symbol `alpha_P`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "alpha_p_lengthening",
"label": "Alpha P Lengthening",
"maps_to": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.alpha_p_lengthening",
"description": "Alpha P Lengthening. Maps to source symbol `alpha_P_lengthening`. Units: per_um. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Katsnelson2004 - Katsnelson Nikitina Chemla Solovyova Coirault Le Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model",
"parameters": {
"model_path": "data/katsnelson_2004a.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model_state"
],
"from": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.state"
},
{
"to": [
"visualisation.physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model_summary"
],
"from": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model_trajectory"
],
"from": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model_variable_labels"
],
"from": "physiology_cellml_katsnelson_nikitina_chemla_solovyova_coirault_le_katsnelsonnikitinachemlasolovyovacoiraultlecarpentiermarkhasin2004_model.variable_labels"
}
],
"package": "katsnelson2004-katsnelson-nikitina-chemla-solovyova-coirault-le",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.1",
"description": "Source-faithful physiology lab for Katsnelson, Nikitina, Chemla, Solovyova, Coirault, Lecarpentier, Markhasin, 2004. Public controls and outputs are mapped to real source symbols for calcium handling.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagekatsnelson2004-katsnelson-nikitina-chemla-solovyova-coirault-le
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother