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Single-model lab wrapper for Lee2018 - Avian human half-saturated incidence (HSI) model. Hanl Lee & Angelyn Lao. Transmission dynamics and control strategies assessment of avian influenza A (H5N6) in the Philippines.
Manifest
{
"io": {
"inputs": [
{
"name": "bird_to_human_transmission",
"label": "Bird To Human Transmission",
"maps_to": "epidemiology_sbml_lee2018_avian_human_half_saturated_incidence_hsi_biomd0000000717_model.bird_to_human_transmission"
},
{
"name": "bird_to_bird_transmission",
"label": "Bird To Bird Transmission",
"maps_to": "epidemiology_sbml_lee2018_avian_human_half_saturated_incidence_hsi_biomd0000000717_model.bird_to_bird_transmission"
},
{
"name": "environmental_transmission",
"label": "Environmental Transmission",
"maps_to": "epidemiology_sbml_lee2018_avian_human_half_saturated_incidence_hsi_biomd0000000717_model.environmental_transmission"
},
{
"name": "infected_bird_culling_rate",
"label": "Infected Bird Culling Rate",
"maps_to": "epidemiology_sbml_lee2018_avian_human_half_saturated_incidence_hsi_biomd0000000717_model.infected_bird_culling_rate"
},
{
"name": "human_quarantine_rate",
"label": "Human Quarantine Rate",
"maps_to": "epidemiology_sbml_lee2018_avian_human_half_saturated_incidence_hsi_biomd0000000717_model.human_quarantine_rate"
}
],
"outputs": [
{
"name": "state",
"label": "Model state",
"maps_to": "epidemiology_sbml_lee2018_avian_human_half_saturated_incidence_hsi_biomd0000000717_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "epidemiology_sbml_lee2018_avian_human_half_saturated_incidence_hsi_biomd0000000717_model.summary"
},
{
"name": "species_labels",
"label": "Species labels",
"maps_to": "epidemiology_sbml_lee2018_avian_human_half_saturated_incidence_hsi_biomd0000000717_model.species_labels"
},
{
"name": "infected_human_i_a",
"label": "Infected Human (I a)",
"maps_to": "epidemiology_sbml_lee2018_avian_human_half_saturated_incidence_hsi_biomd0000000717_model.infected_human_i_a"
},
{
"name": "susceptible_human_s_h",
"label": "Susceptible human (S h)",
"maps_to": "epidemiology_sbml_lee2018_avian_human_half_saturated_incidence_hsi_biomd0000000717_model.susceptible_human_s_h"
},
{
"name": "infected_bird_i_b",
"label": "Infected bird (I b)",
"maps_to": "epidemiology_sbml_lee2018_avian_human_half_saturated_incidence_hsi_biomd0000000717_model.infected_bird_i_b"
},
{
"name": "susceptible_bird_s_b",
"label": "Susceptible bird (S b)",
"maps_to": "epidemiology_sbml_lee2018_avian_human_half_saturated_incidence_hsi_biomd0000000717_model.susceptible_bird_s_b"
}
]
},
"title": "Lee2018 - Avian human half-saturated incidence (HSI) model Lab",
"models": [
{
"path": "models/core",
"alias": "epidemiology_sbml_lee2018_avian_human_half_saturated_incidence_hsi_biomd0000000717_model",
"parameters": {
"model_path": "data/BIOMD0000000717.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.epidemiology_sbml_lee2018_avian_human_half_saturated_incidence_hsi_biomd0000000717_model_state"
],
"from": "epidemiology_sbml_lee2018_avian_human_half_saturated_incidence_hsi_biomd0000000717_model.state"
},
{
"to": [
"visualisation.epidemiology_sbml_lee2018_avian_human_half_saturated_incidence_hsi_biomd0000000717_model_summary"
],
"from": "epidemiology_sbml_lee2018_avian_human_half_saturated_incidence_hsi_biomd0000000717_model.summary"
},
{
"to": [
"visualisation.epidemiology_sbml_lee2018_avian_human_half_saturated_incidence_hsi_biomd0000000717_model_species_labels"
],
"from": "epidemiology_sbml_lee2018_avian_human_half_saturated_incidence_hsi_biomd0000000717_model.species_labels"
}
],
"package": "lee2018-avian-human-saturated-incidence",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Single-model lab wrapper for Lee2018 - Avian human half-saturated incidence (HSI) model. Hanl Lee & Angelyn Lao. Transmission dynamics and control strategies assessment of avian influenza A (H5N6) in the Philippines.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagelee2018-avian-human-saturated-incidence
Created2026-05-15
Updated2026-06-13
biomodels_ebicuratedepidemiologyfaithfulsbmltelluriumvisualisationother