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This model is described inthe article: Metabolic control mechanisms. It can be used to explore tumor-related dynamics and compare treatment-response behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_lac_lactate",
"label": "(LAC) lactate",
"units": "native SBML value",
"default": 0.001,
"maps_to": "oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model.initial_lac_lactate",
"description": "Initial (LAC) lactate. Sets the initial value of bundled SBML symbol `LAC`."
},
{
"name": "initial_pue_enzyme_concerned_in_atp_utilization",
"label": "(PUE) enzyme concerned in ATP utilization",
"units": "native SBML value",
"default": 0.000002,
"maps_to": "oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model.initial_pue_enzyme_concerned_in_atp_utilization",
"description": "Initial (PUE) enzyme concerned in ATP utilization. Sets the initial value of bundled SBML symbol `PUE`."
},
{
"name": "initial_ppp_enzyme_intermediate_concerned_in_atp_utilization",
"label": "(PPP) enzyme intermediate concerned in ATP utilization",
"units": "native SBML value",
"default": 0.000001,
"maps_to": "oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model.initial_ppp_enzyme_intermediate_concerned_in_atp_utilization",
"description": "Initial (PPP) enzyme intermediate concerned in ATP utilization. Sets the initial value of bundled SBML symbol `PPP`."
},
{
"name": "initial_glu_glucose",
"label": "(GLU) glucose",
"units": "native SBML value",
"default": 0,
"maps_to": "oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model.initial_glu_glucose",
"description": "Initial (GLU) glucose. Sets the initial value of bundled SBML symbol `GLU`."
},
{
"name": "initial_eng_hexokinase_glucose_intermediate",
"label": "(ENG) hexokinase glucose intermediate",
"units": "native SBML value",
"default": 0,
"maps_to": "oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model.initial_eng_hexokinase_glucose_intermediate",
"description": "Initial (ENG) hexokinase glucose intermediate. Sets the initial value of bundled SBML symbol `ENG`."
},
{
"name": "initial_glp_glucose_6_phosphate",
"label": "(GLP) glucose 6 phosphate",
"units": "native SBML value",
"default": 0,
"maps_to": "oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model.initial_glp_glucose_6_phosphate",
"description": "Initial (GLP) glucose 6 phosphate. Sets the initial value of bundled SBML symbol `GLP`."
}
],
"outputs": [
{
"name": "lac_lactate",
"maps_to": "oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model.lac_lactate",
"description": "(LAC) lactate observable. Maps to SBML symbol `LAC`."
},
{
"name": "pue_enzyme_concerned_in_atp_utilization",
"maps_to": "oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model.pue_enzyme_concerned_in_atp_utilization",
"description": "(PUE) enzyme concerned in ATP utilization observable. Maps to SBML symbol `PUE`."
},
{
"name": "ppp_enzyme_intermediate_concerned_in_atp_utilization",
"maps_to": "oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model.ppp_enzyme_intermediate_concerned_in_atp_utilization",
"description": "(PPP) enzyme intermediate concerned in ATP utilization observable. Maps to SBML symbol `PPP`."
},
{
"name": "glu_glucose",
"maps_to": "oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model.glu_glucose",
"description": "(GLU) glucose observable. Maps to SBML symbol `GLU`."
},
{
"name": "eng_hexokinase_glucose_intermediate",
"maps_to": "oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model.eng_hexokinase_glucose_intermediate",
"description": "(ENG) hexokinase glucose intermediate observable. Maps to SBML symbol `ENG`."
},
{
"name": "glp_glucose_6_phosphate",
"maps_to": "oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model.glp_glucose_6_phosphate",
"description": "(GLP) glucose 6 phosphate observable. Maps to SBML symbol `GLP`."
},
{
"name": "state",
"maps_to": "oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model.state",
"description": "Full raw SBML observable record for reproducibility and downstream visualisation."
},
{
"name": "summary",
"maps_to": "oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model.summary",
"description": "Change and peak summary across the simulated SBML observables."
},
{
"name": "species_labels",
"maps_to": "oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model.species_labels",
"description": "Mapping from selected raw SBML observable symbols to display labels."
}
]
},
"tags": [
"biomodels_ebi",
"curated",
"drug-response",
"faithful",
"metabolism",
"oncology",
"pharmacology",
"physiology",
"sbml",
"systemsbiology",
"tumor-growth"
],
"title": "Chance1960_Glycolysis_Respiration Lab",
"models": [
{
"path": "models/core",
"alias": "oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model_state"
],
"from": "oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model.state"
},
{
"to": [
"visualisation.oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model_summary"
],
"from": "oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model.summary"
},
{
"to": [
"visualisation.oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model_species_labels"
],
"from": "oncology_sbml_chance1960_glycolysis_respiration_biomd0000000281_model.species_labels"
}
],
"package": "chance1960-glycolysis-respiration",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.0",
"description": "This model is described inthe article: Metabolic control mechanisms. It can be used to explore tumor-related dynamics and compare treatment-response behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagechance1960-glycolysis-respiration
Created2026-05-16
Updated2026-06-13
biomodels_ebicurateddrug-responsefaithfulmetabolismoncologypharmacologyphysiologysbmlsystemsbiologytumor-growthvisualisationother