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Source-faithful physiology lab for Snyder, Palmer, Moore, 2000. Public controls and outputs are mapped to real source symbols for calcium handling.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_ca_2_s1",
"label": "Initial Ca 2 S1",
"maps_to": "physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model.initial_ca_2_s1",
"description": "Initial value for Ca 2 S1. Maps to source symbol `Ca_2_S1`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"molar"
]
},
{
"name": "initial_ca_c",
"label": "Initial Ca C",
"maps_to": "physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model.initial_ca_c",
"description": "Initial value for Ca C. Maps to source symbol `Ca_c`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"molar"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model.variable_labels"
},
{
"name": "km_s",
"label": "Km S",
"maps_to": "physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model.km_s",
"description": "Km S. Maps to source symbol `Km_s`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "vmax_s",
"label": "Vmax S",
"maps_to": "physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model.vmax_s",
"description": "Vmax S. Maps to source symbol `Vmax_s`. Units: flux. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "rate_ca_uptake_by_sr_ca_atpase",
"label": "Rate Ca Uptake By Sr Ca Atpase",
"maps_to": "physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model.rate_ca_uptake_by_sr_ca_atpase",
"description": "Rate Ca Uptake By Sr Ca Atpase. Maps to source symbol `Rate_Ca_uptake_by_SR_Ca_ATPase`. Units: flux. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_2_s1",
"label": "Ca 2 S1",
"maps_to": "physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model.ca_2_s1",
"description": "Ca 2 S1. Maps to source symbol `Ca_2_S1`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_c",
"label": "Ca C",
"maps_to": "physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model.ca_c",
"description": "Ca C. Maps to source symbol `Ca_c`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "ca_csq",
"label": "Ca Csq",
"maps_to": "physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model.ca_csq",
"description": "Ca Csq. Maps to source symbol `Ca_CSQ`. Units: molar. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Snyder2000 - Mathematical Cardiocyte Dynamics Novel Representation Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model",
"parameters": {
"model_path": "data/snyder_palmer_moore_2000.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model_state"
],
"from": "physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model.state"
},
{
"to": [
"visualisation.physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model_summary"
],
"from": "physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model_trajectory"
],
"from": "physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model_variable_labels"
],
"from": "physiology_cellml_snyder_palmer_moore_2000_snyderpalmermoore2000_model.variable_labels"
}
],
"package": "snyder2000-mathematical-cardiocyte-dynamics-novel-representation",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.1",
"description": "Source-faithful physiology lab for Snyder, Palmer, Moore, 2000. Public controls and outputs are mapped to real source symbols for calcium handling.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagesnyder2000-mathematical-cardiocyte-dynamics-novel-representation
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother