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Source-faithful physiology lab for pancreas glucose model. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_glucose_6_phosphate",
"label": "Initial Glucose 6 Phosphate",
"maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.initial_glucose_6_phosphate",
"description": "Initial value for Glucose 6 Phosphate. Maps to source symbol `g6p`. Units: pmole. Naming evidence: source metadata names `g6p` as `glucose 6-phosphate`.",
"accepted_units": [
"pmole"
]
},
{
"name": "initial_glucose_blood",
"label": "Initial Glucose Blood",
"maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.initial_glucose_blood",
"description": "Initial value for Glucose Blood. Maps to source symbol `glc_ext`. Units: pmole. Naming evidence: source metadata names `glc_ext` as `glucose (blood)`.",
"accepted_units": [
"pmole"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.trajectory"
},
{
"name": "species_labels",
"label": "Observable Labels",
"maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.species_labels"
},
{
"name": "atp",
"label": "ATP",
"maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.atp",
"description": "ATP. Maps to source symbol `atp`. Units: pmole. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "adp",
"label": "ADP",
"maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.adp",
"description": "ADP. Maps to source symbol `adp`. Units: pmole. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "dihydroxyacetone_phosphate",
"label": "Dihydroxyacetone Phosphate",
"maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.dihydroxyacetone_phosphate",
"description": "Dihydroxyacetone Phosphate. Maps to source symbol `dhap`. Units: pmole. Naming evidence: source metadata names `dhap` as `dihydroxyacetone phosphate`."
},
{
"name": "fructose_2_6_bisphosphate",
"label": "Fructose 2 6 Bisphosphate",
"maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.fructose_2_6_bisphosphate",
"description": "Fructose 2 6 Bisphosphate. Maps to source symbol `f26bp`. Units: pmole. Naming evidence: source metadata names `f26bp` as `fructose 2,6-bisphosphate`."
},
{
"name": "var_1_3_biphosphoglycerate",
"label": "Var 1 3 Biphosphoglycerate",
"maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.var_1_3_biphosphoglycerate",
"description": "Var 1 3 Biphosphoglycerate. Maps to source symbol `bpg13`. Units: pmole. Naming evidence: source metadata names `bpg13` as `1,3-biphosphoglycerate`."
},
{
"name": "c_peptide",
"label": "C Peptide",
"maps_to": "physiology_sbml_pancreas_glucose_model_model2401110001_model.c_peptide",
"description": "C Peptide. Maps to source symbol `cpep_ext`. Units: pmole. Naming evidence: source metadata names `cpep_ext` as `C-peptide`."
}
]
},
"title": "Biomodels model2401110001 - Pancreas Glucose Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_sbml_pancreas_glucose_model_model2401110001_model",
"parameters": {
"model_path": "data/MODEL2401110001.xml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_sbml_pancreas_glucose_model_model2401110001_model_state"
],
"from": "physiology_sbml_pancreas_glucose_model_model2401110001_model.state"
},
{
"to": [
"visualisation.physiology_sbml_pancreas_glucose_model_model2401110001_model_summary"
],
"from": "physiology_sbml_pancreas_glucose_model_model2401110001_model.summary"
},
{
"to": [
"visualisation.physiology_sbml_pancreas_glucose_model_model2401110001_model_trajectory"
],
"from": "physiology_sbml_pancreas_glucose_model_model2401110001_model.trajectory"
},
{
"to": [
"visualisation.physiology_sbml_pancreas_glucose_model_model2401110001_model_species_labels"
],
"from": "physiology_sbml_pancreas_glucose_model_model2401110001_model.species_labels"
}
],
"package": "biomodelsmodel2401110001-pancreas-glucose",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for pancreas glucose model. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagebiomodelsmodel2401110001-pancreas-glucose
Created2026-05-23
Updated2026-06-13
physiologysbmlbiomodels_ebifaithfulvisualisationother