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Clean Biosimulant lab for metabolic and hormone-linked signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_amino_acids_input",
"label": "Amino Acids Input",
"maps_to": "signaling_sbml_dicamillo2016_insulin_signalling_pathway_rule_ba_biomd0000000833_model.initial_amino_acids_input",
"description": "Amino Acids Input source parameter. Maps to SBML symbol `Amino_Acids_input` and preserves the bundled default."
}
],
"outputs": [
{
"name": "akt_s474_u_t309_u",
"label": "AKT S474 U T309 U",
"maps_to": "signaling_sbml_dicamillo2016_insulin_signalling_pathway_rule_ba_biomd0000000833_model.akt_s474_u_t309_u",
"description": "AKT S474 U T309 U. Maps to SBML symbol `S15` and is emitted in native SBML units."
},
{
"name": "gs_sh2_state_a",
"label": "GS SH2 State A",
"maps_to": "signaling_sbml_dicamillo2016_insulin_signalling_pathway_rule_ba_biomd0000000833_model.gs_sh2_state_a",
"description": "GS SH2 State A. Maps to SBML symbol `S20` and is emitted in native SBML units."
},
{
"name": "ras_gap_bs",
"label": "RAS GAP Bs",
"maps_to": "signaling_sbml_dicamillo2016_insulin_signalling_pathway_rule_ba_biomd0000000833_model.ras_gap_bs",
"description": "RAS GAP Bs. Maps to SBML symbol `S21` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_dicamillo2016_insulin_signalling_pathway_rule_ba_biomd0000000833_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_dicamillo2016_insulin_signalling_pathway_rule_ba_biomd0000000833_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_dicamillo2016_insulin_signalling_pathway_rule_ba_biomd0000000833_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"metabolic-signaling",
"hormone-signaling"
],
"title": "DiCamillo2016 - Insulin signalling pathway - Rule-based model Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_dicamillo2016_insulin_signalling_pathway_rule_ba_biomd0000000833_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_dicamillo2016_insulin_signalling_pathway_rule_ba_biomd0000000833_model_state"
],
"from": "signaling_sbml_dicamillo2016_insulin_signalling_pathway_rule_ba_biomd0000000833_model.state"
},
{
"to": [
"visualisation.signaling_sbml_dicamillo2016_insulin_signalling_pathway_rule_ba_biomd0000000833_model_summary"
],
"from": "signaling_sbml_dicamillo2016_insulin_signalling_pathway_rule_ba_biomd0000000833_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_dicamillo2016_insulin_signalling_pathway_rule_ba_biomd0000000833_model_species_labels"
],
"from": "signaling_sbml_dicamillo2016_insulin_signalling_pathway_rule_ba_biomd0000000833_model.species_labels"
}
],
"package": "dicamillo2016-insulin-signalling-pathway-rule-ba",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for metabolic and hormone-linked signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagedicamillo2016-insulin-signalling-pathway-rule-ba
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimetabolic-signalinghormone-signalingvisualisationother