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Clean Biosimulant lab for metabolic and hormone-linked signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_cytoplasm_foxo1_tot",
"label": "Initial Cytoplasm Foxo1 Tot",
"maps_to": "signaling_sbml_smith2013_regulation_of_insulin_signalling_by_ox_biomd0000000474_model.initial_cytoplasm_foxo1_tot",
"description": "Initial level of Cytoplasm Foxo1 Tot. Maps to SBML symbol `cytoplasm_Foxo1_tot`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_dnabound_foxo1_tot",
"label": "Initial Dnabound Foxo1 Tot",
"maps_to": "signaling_sbml_smith2013_regulation_of_insulin_signalling_by_ox_biomd0000000474_model.initial_dnabound_foxo1_tot",
"description": "Initial level of Dnabound Foxo1 Tot. Maps to SBML symbol `dnabound_Foxo1_tot`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_dusp_dusp_ox",
"label": "Initial DUSP DUSP Ox",
"maps_to": "signaling_sbml_smith2013_regulation_of_insulin_signalling_by_ox_biomd0000000474_model.initial_dusp_dusp_ox",
"description": "Initial level of DUSP DUSP Ox. Maps to SBML symbol `DUSP_plus_DUSP_ox`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "in_r_active",
"label": "In R active",
"maps_to": "signaling_sbml_smith2013_regulation_of_insulin_signalling_by_ox_biomd0000000474_model.in_r_active",
"description": "In R active. Maps to SBML symbol `InR_active` and is emitted in native SBML units."
},
{
"name": "akt",
"label": "AKT",
"maps_to": "signaling_sbml_smith2013_regulation_of_insulin_signalling_by_ox_biomd0000000474_model.akt",
"description": "AKT. Maps to SBML symbol `Akt` and is emitted in native SBML units."
},
{
"name": "source_defined_akt_p2_state",
"label": "source-defined AKT_P2 state",
"maps_to": "signaling_sbml_smith2013_regulation_of_insulin_signalling_by_ox_biomd0000000474_model.source_defined_akt_p2_state",
"description": "source-defined AKT_P2 state. Maps to SBML symbol `Akt_P2` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_smith2013_regulation_of_insulin_signalling_by_ox_biomd0000000474_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_smith2013_regulation_of_insulin_signalling_by_ox_biomd0000000474_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_smith2013_regulation_of_insulin_signalling_by_ox_biomd0000000474_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"stress-response",
"metabolic-signaling",
"hormone-signaling"
],
"title": "Smith2013 - Regulation of Insulin Signalling by Oxidative Stress Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_smith2013_regulation_of_insulin_signalling_by_ox_biomd0000000474_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_smith2013_regulation_of_insulin_signalling_by_ox_biomd0000000474_model_state"
],
"from": "signaling_sbml_smith2013_regulation_of_insulin_signalling_by_ox_biomd0000000474_model.state"
},
{
"to": [
"visualisation.signaling_sbml_smith2013_regulation_of_insulin_signalling_by_ox_biomd0000000474_model_summary"
],
"from": "signaling_sbml_smith2013_regulation_of_insulin_signalling_by_ox_biomd0000000474_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_smith2013_regulation_of_insulin_signalling_by_ox_biomd0000000474_model_species_labels"
],
"from": "signaling_sbml_smith2013_regulation_of_insulin_signalling_by_ox_biomd0000000474_model.species_labels"
}
],
"package": "smith2013-regulation-of-insulin-signalling-by-ox",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for metabolic and hormone-linked signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagesmith2013-regulation-of-insulin-signalling-by-ox
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebistress-responsemetabolic-signalinghormone-signalingvisualisationother