Gerard2009 - Temporal Self Organization Cyclin Cdk Network Driving Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_calcium_concentration",
        "label": "Initial Calcium Concentration",
        "maps_to": "physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model.initial_calcium_concentration",
        "description": "Initial value for Calcium Concentration. Maps to source symbol `Ca`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "micromolar"
        ]
      },
      {
        "name": "initial_cell_cycle_state_bc",
        "label": "Initial Cell Cycle State Bc (source BC)",
        "maps_to": "physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model.initial_cell_cycle_state_bc",
        "description": "Initial value for Cell Cycle State Bc (source BC). Maps to source symbol `BC`. Units: nanomolar. Naming evidence: cell-cycle context supports a conservative source-state label.",
        "accepted_units": [
          "nanomolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model.variable_labels"
      },
      {
        "name": "calcium_concentration",
        "label": "Calcium Concentration",
        "maps_to": "physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model.calcium_concentration",
        "description": "Calcium Concentration. Maps to source symbol `Ca`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cell_cycle_state_bc",
        "label": "Cell Cycle State Bc (source BC)",
        "maps_to": "physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model.cell_cycle_state_bc",
        "description": "Cell Cycle State Bc (source BC). Maps to source symbol `BC`. Units: nanomolar. Naming evidence: cell-cycle context supports a conservative source-state label."
      },
      {
        "name": "cell_cycle_state_bn",
        "label": "Cell Cycle State Bn (source BN)",
        "maps_to": "physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model.cell_cycle_state_bn",
        "description": "Cell Cycle State Bn (source BN). Maps to source symbol `BN`. Units: nanomolar. Naming evidence: cell-cycle context supports a conservative source-state label."
      },
      {
        "name": "ap1",
        "label": "Ap1",
        "maps_to": "physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model.ap1",
        "description": "Ap1. Maps to source symbol `AP1`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "atr",
        "label": "Atr",
        "maps_to": "physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model.atr",
        "description": "Atr. Maps to source symbol `ATR`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "bcp",
        "label": "Bcp",
        "maps_to": "physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model.bcp",
        "description": "Bcp. Maps to source symbol `BCP`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Gerard2009 - Temporal Self Organization Cyclin Cdk Network Driving Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model",
      "parameters": {
        "model_path": "data/gerard_2009.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model_state"
      ],
      "from": "physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model_summary"
      ],
      "from": "physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model_trajectory"
      ],
      "from": "physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model_variable_labels"
      ],
      "from": "physiology_cellml_gerard_and_goldbeter_2009_gerardgoldbeter2009_model.variable_labels"
    }
  ],
  "package": "gerard2009-temporal-self-organization-cyclin-cdk-network-driving",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.1",
  "description": "Source-faithful physiology lab for Gerard and Goldbeter 2009. Public controls and outputs are mapped to real source symbols for cell-cycle dynamics.",
  "schema_version": "2.0"
}