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Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_myc_transcription_factor_total",
"label": "Initial MYC transcription factor Total",
"maps_to": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.initial_myc_transcription_factor_total",
"description": "Initial level of MYC transcription factor Total. Maps to SBML symbol `Myc_total`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "akt",
"label": "AKT",
"maps_to": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.akt",
"description": "AKT. Maps to SBML symbol `AKT` and is emitted in native SBML units."
},
{
"name": "phosphorylated_akt",
"label": "phosphorylated AKT",
"maps_to": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.phosphorylated_akt",
"description": "phosphorylated AKT. Maps to SBML symbol `AKTp` and is emitted in native SBML units."
},
{
"name": "erk",
"label": "ERK",
"maps_to": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.erk",
"description": "ERK. Maps to SBML symbol `ERK` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"mapk",
"ras-erk",
"pi3k-akt"
],
"title": "Lee2008 - ERK and PI3K signal integration by Myc Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model_state"
],
"from": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.state"
},
{
"to": [
"visualisation.signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model_summary"
],
"from": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model_species_labels"
],
"from": "signaling_sbml_lee2008_erk_and_pi3k_signal_integration_by_myc_biomd0000000818_model.species_labels"
}
],
"package": "lee2008-erk-and-pi3k-signal-integration-by-myc",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagelee2008-erk-and-pi3k-signal-integration-by-myc
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimapkras-erkpi3k-aktvisualisationother