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Clean Biosimulant lab for systems signaling model: Gex-Fabry1984 - model of receptor-mediated endocytosis of EGF in BALB/c 3T3 cells. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_internalised_ligand",
"label": "Initial Internalised Ligand",
"maps_to": "signaling_sbml_gex_fabry1984_model_of_receptor_mediated_endocyt_biomd0000000985_model.initial_internalised_ligand",
"description": "Initial level of Internalised Ligand. Maps to SBML symbol `Internalised_Ligand`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_ligand_egf",
"label": "Initial Ligand EGF",
"maps_to": "signaling_sbml_gex_fabry1984_model_of_receptor_mediated_endocyt_biomd0000000985_model.initial_ligand_egf",
"description": "Initial level of Ligand EGF. Maps to SBML symbol `Ligand_EGF`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_receptor_ligand_complex",
"label": "Initial Receptor Ligand Complex",
"maps_to": "signaling_sbml_gex_fabry1984_model_of_receptor_mediated_endocyt_biomd0000000985_model.initial_receptor_ligand_complex",
"description": "Initial level of Receptor Ligand Complex. Maps to SBML symbol `Receptor_Ligand_Complex`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "surface_receptor_external",
"label": "Surface Receptor External",
"maps_to": "signaling_sbml_gex_fabry1984_model_of_receptor_mediated_endocyt_biomd0000000985_model.surface_receptor_external",
"description": "Surface Receptor External. Maps to SBML symbol `Surface_Receptor_External` and is emitted in native SBML units."
},
{
"name": "receptor_ligand_complex",
"label": "Receptor Ligand Complex",
"maps_to": "signaling_sbml_gex_fabry1984_model_of_receptor_mediated_endocyt_biomd0000000985_model.receptor_ligand_complex",
"description": "Receptor Ligand Complex. Maps to SBML symbol `Receptor_Ligand_Complex` and is emitted in native SBML units."
},
{
"name": "internalised_receptors",
"label": "Internalised Receptors",
"maps_to": "signaling_sbml_gex_fabry1984_model_of_receptor_mediated_endocyt_biomd0000000985_model.internalised_receptors",
"description": "Internalised Receptors. Maps to SBML symbol `Internalised_receptors` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_gex_fabry1984_model_of_receptor_mediated_endocyt_biomd0000000985_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_gex_fabry1984_model_of_receptor_mediated_endocyt_biomd0000000985_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_gex_fabry1984_model_of_receptor_mediated_endocyt_biomd0000000985_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"gpcr"
],
"title": "Gex-Fabry1984 - model of receptor-mediated endocytosis of EGF in BALB/c 3T3 cells Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_gex_fabry1984_model_of_receptor_mediated_endocyt_biomd0000000985_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_gex_fabry1984_model_of_receptor_mediated_endocyt_biomd0000000985_model_state"
],
"from": "signaling_sbml_gex_fabry1984_model_of_receptor_mediated_endocyt_biomd0000000985_model.state"
},
{
"to": [
"visualisation.signaling_sbml_gex_fabry1984_model_of_receptor_mediated_endocyt_biomd0000000985_model_summary"
],
"from": "signaling_sbml_gex_fabry1984_model_of_receptor_mediated_endocyt_biomd0000000985_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_gex_fabry1984_model_of_receptor_mediated_endocyt_biomd0000000985_model_species_labels"
],
"from": "signaling_sbml_gex_fabry1984_model_of_receptor_mediated_endocyt_biomd0000000985_model.species_labels"
}
],
"package": "gex-fabry1984-model-of-receptor-mediated-endocyt",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for systems signaling model: Gex-Fabry1984 - model of receptor-mediated endocytosis of EGF in BALB/c 3T3 cells. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagegex-fabry1984-model-of-receptor-mediated-endocyt
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebigpcrvisualisationother