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Source-faithful physiology lab for Example bond graph models. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_main_q1",
"label": "Initial Main Q1",
"maps_to": "physiology_cellml_example_bond_graph_models_47d_model.initial_main_q1",
"description": "Initial value for Main Q1. Maps to source symbol `q1`. Units: coulomb. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"coulomb"
]
},
{
"name": "initial_main_q2",
"label": "Initial Main Q2",
"maps_to": "physiology_cellml_example_bond_graph_models_47d_model.initial_main_q2",
"description": "Initial value for Main Q2. Maps to source symbol `q2`. Units: coulomb. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"coulomb"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_example_bond_graph_models_47d_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_example_bond_graph_models_47d_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_example_bond_graph_models_47d_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_example_bond_graph_models_47d_model.variable_labels"
},
{
"name": "main_q1",
"label": "Main Q1",
"maps_to": "physiology_cellml_example_bond_graph_models_47d_model.main_q1",
"description": "Main Q1. Maps to source symbol `q1`. Units: coulomb. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "main_q2",
"label": "Main Q2",
"maps_to": "physiology_cellml_example_bond_graph_models_47d_model.main_q2",
"description": "Main Q2. Maps to source symbol `q2`. Units: coulomb. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "main_c1",
"label": "Main C1",
"maps_to": "physiology_cellml_example_bond_graph_models_47d_model.main_c1",
"description": "Main C1. Maps to source symbol `C1`. Units: C2_per_J. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "main_c2",
"label": "Main C2",
"maps_to": "physiology_cellml_example_bond_graph_models_47d_model.main_c2",
"description": "Main C2. Maps to source symbol `C2`. Units: C2_per_J. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "main_r1",
"label": "Main R1",
"maps_to": "physiology_cellml_example_bond_graph_models_47d_model.main_r1",
"description": "Main R1. Maps to source symbol `R1`. Units: Js_per_C2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "main_u1",
"label": "Main U1",
"maps_to": "physiology_cellml_example_bond_graph_models_47d_model.main_u1",
"description": "Main U1. Maps to source symbol `u1`. Units: J_per_C. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Physiome 47d - Example Bond Graph Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_example_bond_graph_models_47d_model",
"parameters": {
"model_path": "data/BG_tutorial_model_electrical_1.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_example_bond_graph_models_47d_model_state"
],
"from": "physiology_cellml_example_bond_graph_models_47d_model.state"
},
{
"to": [
"visualisation.physiology_cellml_example_bond_graph_models_47d_model_summary"
],
"from": "physiology_cellml_example_bond_graph_models_47d_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_example_bond_graph_models_47d_model_trajectory"
],
"from": "physiology_cellml_example_bond_graph_models_47d_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_example_bond_graph_models_47d_model_variable_labels"
],
"from": "physiology_cellml_example_bond_graph_models_47d_model.variable_labels"
}
],
"package": "physiome47d-example-bond-graph",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Example bond graph models. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagephysiome47d-example-bond-graph
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother