About lab
One published Lab
Build with this Lab. Run it anywhere.
Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
Sluka2016 - Acetaminophen metabolism Liver metabolism of Acetaminophen: Acetaminophen (APAP) ismetabolized in the liver in both Phase I and Phase II reactions.Phase II reactions convert APAP to APAP-g. It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_drug_metabolism_state_1",
"units": "native SBML value",
"default": 0.1,
"maps_to": "metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model.initial_drug_metabolism_state_1",
"description": "Initial condition for drug metabolism state 1. Maps to bundled SBML symbol `APAP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_drug_metabolism_state_2",
"units": "native SBML value",
"default": 0,
"maps_to": "metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model.initial_drug_metabolism_state_2",
"description": "Initial condition for drug metabolism state 2. Maps to bundled SBML symbol `NAPQI`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_glutathione",
"units": "native SBML value",
"default": 10,
"maps_to": "metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model.initial_glutathione",
"description": "Initial condition for glutathione. Maps to bundled SBML symbol `GSH`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_drug_metabolism_state_4",
"units": "native SBML value",
"default": 0,
"maps_to": "metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model.initial_drug_metabolism_state_4",
"description": "Initial condition for drug metabolism state 4. Maps to bundled SBML symbol `NAPQIGSH`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_drug_metabolism_state_5",
"units": "native SBML value",
"default": 0,
"maps_to": "metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model.initial_drug_metabolism_state_5",
"description": "Initial condition for drug metabolism state 5. Maps to bundled SBML symbol `APAPconj_Glu`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
}
],
"outputs": [
{
"name": "drug_metabolism_state_1",
"maps_to": "metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model.drug_metabolism_state_1"
},
{
"name": "drug_metabolism_state_2",
"maps_to": "metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model.drug_metabolism_state_2"
},
{
"name": "glutathione",
"maps_to": "metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model.glutathione"
},
{
"name": "drug_metabolism_state_4",
"maps_to": "metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model.drug_metabolism_state_4"
},
{
"name": "drug_metabolism_state_5",
"maps_to": "metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model.drug_metabolism_state_5"
},
{
"name": "observable_values",
"maps_to": "metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model.observable_values"
},
{
"name": "run_summary",
"maps_to": "metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model.run_summary"
},
{
"name": "observable_labels",
"maps_to": "metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model.observable_labels"
}
]
},
"title": "Sluka2016 - Acetaminophen metabolism Lab",
"models": [
{
"path": "models/core",
"alias": "metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model",
"parameters": {
"model_path": "data/BIOMD0000000624.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model_observable_values"
],
"from": "metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model.observable_values"
},
{
"to": [
"visualisation.metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model_run_summary"
],
"from": "metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model.run_summary"
},
{
"to": [
"visualisation.metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model_observable_labels"
],
"from": "metabolism_sbml_sluka2016_acetaminophen_metabolism_biomd0000000624_model.observable_labels"
}
],
"package": "sluka2016-acetaminophen-metabolism",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.0",
"description": "Sluka2016 - Acetaminophen metabolism Liver metabolism of Acetaminophen: Acetaminophen (APAP) ismetabolized in the liver in both Phase I and Phase II reactions.Phase II reactions convert APAP to APAP-g. It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagesluka2016-acetaminophen-metabolism
Created2026-05-15
Updated2026-06-13
biomodels_ebifaithfulmetabolismodesbmltelluriumvisualisationother