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Source-faithful physiology lab for Tyson, 1991. Public controls and outputs are mapped to real source symbols for cell-cycle dynamics.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_active_mpf",
"label": "Initial Active Mpf",
"maps_to": "physiology_cellml_tyson_1991_tyson1991_model.initial_active_mpf",
"description": "Initial value for Active Mpf. Maps to source symbol `M`. Units: millimolar. Naming evidence: source metadata names `M` as `active MPF`.",
"accepted_units": [
"millimolar"
]
},
{
"name": "initial_cdc2",
"label": "Initial Cdc2",
"maps_to": "physiology_cellml_tyson_1991_tyson1991_model.initial_cdc2",
"description": "Initial value for Cdc2. Maps to source symbol `C2`. Units: millimolar. Naming evidence: source metadata names `C2` as `cdc2`.",
"accepted_units": [
"millimolar"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_tyson_1991_tyson1991_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_tyson_1991_tyson1991_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_tyson_1991_tyson1991_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_tyson_1991_tyson1991_model.variable_labels"
},
{
"name": "active_mpf",
"label": "Active Mpf",
"maps_to": "physiology_cellml_tyson_1991_tyson1991_model.active_mpf",
"description": "Active Mpf. Maps to source symbol `M`. Units: millimolar. Naming evidence: source metadata names `M` as `active MPF`."
},
{
"name": "cdc2",
"label": "Cdc2",
"maps_to": "physiology_cellml_tyson_1991_tyson1991_model.cdc2",
"description": "Cdc2. Maps to source symbol `C2`. Units: millimolar. Naming evidence: source metadata names `C2` as `cdc2`."
},
{
"name": "cdc2_p",
"label": "Cdc2 P",
"maps_to": "physiology_cellml_tyson_1991_tyson1991_model.cdc2_p",
"description": "Cdc2 P. Maps to source symbol `CP`. Units: millimolar. Naming evidence: source metadata names `CP` as `cdc2-P`."
},
{
"name": "cyclin",
"label": "Cyclin",
"maps_to": "physiology_cellml_tyson_1991_tyson1991_model.cyclin",
"description": "Cyclin. Maps to source symbol `Y`. Units: millimolar. Naming evidence: source metadata names `Y` as `cyclin`."
},
{
"name": "cyclin_p",
"label": "Cyclin P",
"maps_to": "physiology_cellml_tyson_1991_tyson1991_model.cyclin_p",
"description": "Cyclin P. Maps to source symbol `YP`. Units: millimolar. Naming evidence: source metadata names `YP` as `cyclin-P`."
},
{
"name": "pre_mpf",
"label": "Pre Mpf",
"maps_to": "physiology_cellml_tyson_1991_tyson1991_model.pre_mpf",
"description": "Pre Mpf. Maps to source symbol `pM`. Units: millimolar. Naming evidence: source metadata names `pM` as `preMPF`."
}
]
},
"title": "Tyson1991 - John Cell Division Cycle Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_tyson_1991_tyson1991_model",
"parameters": {
"model_path": "data/tyson_1991.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_tyson_1991_tyson1991_model_state"
],
"from": "physiology_cellml_tyson_1991_tyson1991_model.state"
},
{
"to": [
"visualisation.physiology_cellml_tyson_1991_tyson1991_model_summary"
],
"from": "physiology_cellml_tyson_1991_tyson1991_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_tyson_1991_tyson1991_model_trajectory"
],
"from": "physiology_cellml_tyson_1991_tyson1991_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_tyson_1991_tyson1991_model_variable_labels"
],
"from": "physiology_cellml_tyson_1991_tyson1991_model.variable_labels"
}
],
"package": "tyson1991-john-cell-division-cycle",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Tyson, 1991. Public controls and outputs are mapped to real source symbols for cell-cycle dynamics.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagetyson1991-john-cell-division-cycle
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother