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This a model from the article: A Case Study in Model-driven Synthetic Biology David Gilbert, Monika Heiner, Susan Rosser, Rachael Fulton, Xu Gu and Maciej Trybilo IFIP International Federation for Inf. It can be used to explore systemsbiology gilbert2008 electrochemicalbiosensor model1173105855 dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "feedback_on",
"label": "Feedback On",
"maps_to": "systemsbiology_sbml_gilbert2008_electrochemicalbiosensor_model1173105855_model.feedback_on",
"description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `feedbackOn`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_gilbert2008_electrochemicalbiosensor_model1173105855_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_gilbert2008_electrochemicalbiosensor_model1173105855_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_gilbert2008_electrochemicalbiosensor_model1173105855_model.species_labels"
},
{
"name": "tfs",
"maps_to": "systemsbiology_sbml_gilbert2008_electrochemicalbiosensor_model1173105855_model.tfs"
},
{
"name": "model_state_tf",
"maps_to": "systemsbiology_sbml_gilbert2008_electrochemicalbiosensor_model1173105855_model.model_state_tf"
},
{
"name": "phz_ms",
"maps_to": "systemsbiology_sbml_gilbert2008_electrochemicalbiosensor_model1173105855_model.phz_ms"
},
{
"name": "pyo",
"maps_to": "systemsbiology_sbml_gilbert2008_electrochemicalbiosensor_model1173105855_model.pyo"
}
]
},
"tags": [
"generegulation",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Gilbert2008 Electrochemicalbiosensor Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_gilbert2008_electrochemicalbiosensor_model1173105855_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_gilbert2008_electrochemicalbiosensor_model1173105855_model_state"
],
"from": "systemsbiology_sbml_gilbert2008_electrochemicalbiosensor_model1173105855_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_gilbert2008_electrochemicalbiosensor_model1173105855_model_summary"
],
"from": "systemsbiology_sbml_gilbert2008_electrochemicalbiosensor_model1173105855_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_gilbert2008_electrochemicalbiosensor_model1173105855_model_species_labels"
],
"from": "systemsbiology_sbml_gilbert2008_electrochemicalbiosensor_model1173105855_model.species_labels"
}
],
"package": "gilbert2008-electrochemicalbiosensor",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This a model from the article: A Case Study in Model-driven Synthetic Biology David Gilbert, Monika Heiner, Susan Rosser, Rachael Fulton, Xu Gu and Maciej Trybilo IFIP International Federation for Inf. It can be used to explore systemsbiology gilbert2008 electrochemicalbiosensor model1173105855 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagegilbert2008-electrochemicalbiosensor
Created2026-05-17
Updated2026-06-13
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother