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Source-faithful physiology lab for Swanson, True, Lin, Buhler, Vessella, Murray, 2001. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_serum_psa_dynamics_p",
"label": "Initial Serum Psa Dynamics P",
"maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.initial_serum_psa_dynamics_p",
"description": "Initial value for Serum Psa Dynamics P. Maps to source symbol `p`. Units: ng_per_mm3. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"ng_per_mm3"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.variable_labels"
},
{
"name": "serum_psa_dynamics_p",
"label": "Serum Psa Dynamics P",
"maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.serum_psa_dynamics_p",
"description": "Serum Psa Dynamics P. Maps to source symbol `p`. Units: ng_per_mm3. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "beta_c",
"label": "Beta C",
"maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.beta_c",
"description": "Beta C. Maps to source symbol `beta_c`. Units: ng_per_mm3_per_day. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "beta_h",
"label": "Beta H",
"maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.beta_h",
"description": "Beta H. Maps to source symbol `beta_h`. Units: ng_per_mm3_per_day. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "gamma",
"label": "Gamma",
"maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.gamma",
"description": "Gamma. Maps to source symbol `gamma`. Units: per_day. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "rho",
"label": "Rho",
"maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.rho",
"description": "Rho. Maps to source symbol `rho`. Units: per_day. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "serum_psa_dynamics_vc",
"label": "Serum Psa Dynamics Vc",
"maps_to": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.serum_psa_dynamics_vc",
"description": "Serum Psa Dynamics Vc. Maps to source symbol `Vc`. Units: mm3. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Swanson2001 - Mathematical Dynamics Serum Prostate Specific Antigen Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model",
"parameters": {
"model_path": "data/swanson_true_lin_buhler_vessella_murray_2001.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model_state"
],
"from": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.state"
},
{
"to": [
"visualisation.physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model_summary"
],
"from": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model_trajectory"
],
"from": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model_variable_labels"
],
"from": "physiology_cellml_swanson_true_lin_buhler_vessella_murray_2001_swansontruelinbuhlervessellamurray2001_model.variable_labels"
}
],
"package": "swanson2001-mathematical-dynamics-serum-prostate-specif-d2239c7f",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Swanson, True, Lin, Buhler, Vessella, Murray, 2001. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packageswanson2001-mathematical-dynamics-serum-prostate-specif-d2239c7f
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother