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Source-faithful physiology lab for H+-ATPase (proton pump). Public controls and outputs are mapped to real source symbols for transport physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_p_h_ext",
"label": "Initial P H Ext",
"maps_to": "physiology_cellml_h_atpase_proton_pump_293_model.initial_p_h_ext",
"description": "Initial value for P H Ext. Maps to source symbol `pH_ext`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_p_h_int",
"label": "Initial P H Int",
"maps_to": "physiology_cellml_h_atpase_proton_pump_293_model.initial_p_h_int",
"description": "Initial value for P H Int. Maps to source symbol `pH_int`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_h_atpase_proton_pump_293_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_h_atpase_proton_pump_293_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_h_atpase_proton_pump_293_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_h_atpase_proton_pump_293_model.variable_labels"
},
{
"name": "h_atpase_f",
"label": "H Atpase F",
"maps_to": "physiology_cellml_h_atpase_proton_pump_293_model.h_atpase_f",
"description": "H Atpase F. Maps to source symbol `F`. Units: C_per_mol. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "h_atpase_r",
"label": "H Atpase R",
"maps_to": "physiology_cellml_h_atpase_proton_pump_293_model.h_atpase_r",
"description": "H Atpase R. Maps to source symbol `R`. Units: mJ_per_mol_per_kelvin. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "h_atpase_t",
"label": "H Atpase T",
"maps_to": "physiology_cellml_h_atpase_proton_pump_293_model.h_atpase_t",
"description": "H Atpase T. Maps to source symbol `T`. Units: kelvin. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "h_atpase_xi",
"label": "H Atpase Xi",
"maps_to": "physiology_cellml_h_atpase_proton_pump_293_model.h_atpase_xi",
"description": "H Atpase Xi. Maps to source symbol `xi`. Units: mol_per_mJ. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "h_atpase_z",
"label": "H Atpase Z",
"maps_to": "physiology_cellml_h_atpase_proton_pump_293_model.h_atpase_z",
"description": "H Atpase Z. Maps to source symbol `z`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "j_vtype_h",
"label": "J Vtype H",
"maps_to": "physiology_cellml_h_atpase_proton_pump_293_model.j_vtype_h",
"description": "J Vtype H. Maps to source symbol `J_Vtype_H`. Units: umol_per_s_per_cm2_1. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Physiome 293 - H Atpase Proton Pump Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_h_atpase_proton_pump_293_model",
"parameters": {
"model_path": "data/HATPase_test.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_h_atpase_proton_pump_293_model_state"
],
"from": "physiology_cellml_h_atpase_proton_pump_293_model.state"
},
{
"to": [
"visualisation.physiology_cellml_h_atpase_proton_pump_293_model_summary"
],
"from": "physiology_cellml_h_atpase_proton_pump_293_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_h_atpase_proton_pump_293_model_trajectory"
],
"from": "physiology_cellml_h_atpase_proton_pump_293_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_h_atpase_proton_pump_293_model_variable_labels"
],
"from": "physiology_cellml_h_atpase_proton_pump_293_model.variable_labels"
}
],
"package": "physiome293-h-atpase-proton-pump",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for H+-ATPase (proton pump). Public controls and outputs are mapped to real source symbols for transport physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagephysiome293-h-atpase-proton-pump
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother