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Clean Biosimulant lab for cell-cycle regulatory signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_cdc14_phosphatase",
"label": "Initial Cdc14 phosphatase",
"maps_to": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.initial_cdc14_phosphatase",
"description": "Initial level of Cdc14 phosphatase. Maps to SBML symbol `Cdc14`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_cdh1_cell_cycle_regulator",
"label": "Initial Cdh1 cell-cycle regulator",
"maps_to": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.initial_cdh1_cell_cycle_regulator",
"description": "Initial level of Cdh1 cell-cycle regulator. Maps to SBML symbol `Cdh1`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_cdh1p1",
"label": "Initial Cdh1p1",
"maps_to": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.initial_cdh1p1",
"description": "Initial level of Cdh1p1. Maps to SBML symbol `Cdh1P1`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "cln3_cyclin",
"label": "Cln3 cyclin",
"maps_to": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.cln3_cyclin",
"description": "Cln3 cyclin. Maps to SBML symbol `Cln3` and is emitted in native SBML units."
},
{
"name": "mitotic_clb_cyclin",
"label": "mitotic Clb cyclin",
"maps_to": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.mitotic_clb_cyclin",
"description": "mitotic Clb cyclin. Maps to SBML symbol `ClbM` and is emitted in native SBML units."
},
{
"name": "s_phase_clb_cyclin",
"label": "S-phase Clb cyclin",
"maps_to": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.s_phase_clb_cyclin",
"description": "S-phase Clb cyclin. Maps to SBML symbol `ClbS` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cell-cycle-signaling"
],
"title": "A model of yeast cell-cycle regulation based on multisite phosphorylation_1_1_1 Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model_state"
],
"from": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.state"
},
{
"to": [
"visualisation.signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model_summary"
],
"from": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model_species_labels"
],
"from": "signaling_sbml_a_model_of_yeast_cell_cycle_regulation_based_on_model1812060001_model.species_labels"
}
],
"package": "barik2060-model-of-yeast-cell-cycle-regulation-based-on-69af50c1",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for cell-cycle regulatory signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebarik2060-model-of-yeast-cell-cycle-regulation-based-on-69af50c1
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicell-cycle-signalingvisualisationother