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Source-faithful physiology lab for Cronwright, Rohwer, Prior, 2002. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_glycerol_3_phosphate",
"label": "Initial Glycerol 3 Phosphate",
"maps_to": "physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model.initial_glycerol_3_phosphate",
"description": "Initial value for Glycerol 3 Phosphate. Maps to source symbol `G3P`. Units: millimolar. Naming evidence: source metadata names `G3P` as `Glycerol 3-phosphate`.",
"accepted_units": [
"millimolar"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model.variable_labels"
},
{
"name": "adenosine_triphosphate",
"label": "Adenosine Triphosphate",
"maps_to": "physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model.adenosine_triphosphate",
"description": "Adenosine Triphosphate. Maps to source symbol `ATP`. Units: millimolar. Naming evidence: source metadata names `ATP` as `Adenosine triphosphate`."
},
{
"name": "adenosine_diphosphate",
"label": "Adenosine Diphosphate",
"maps_to": "physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model.adenosine_diphosphate",
"description": "Adenosine Diphosphate. Maps to source symbol `ADP`. Units: millimolar. Naming evidence: source metadata names `ADP` as `Adenosine diphosphate`."
},
{
"name": "k_atp",
"label": "K ATP",
"maps_to": "physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model.k_atp",
"description": "K ATP. Maps to source symbol `K_ATP`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "k_adp",
"label": "K ADP",
"maps_to": "physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model.k_adp",
"description": "K ADP. Maps to source symbol `K_ADP`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "glycerol_3_phosphate",
"label": "Glycerol 3 Phosphate",
"maps_to": "physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model.glycerol_3_phosphate",
"description": "Glycerol 3 Phosphate. Maps to source symbol `G3P`. Units: millimolar. Naming evidence: source metadata names `G3P` as `Glycerol 3-phosphate`."
},
{
"name": "concentration_k_pi",
"label": "Concentration K Pi (source K_Pi)",
"maps_to": "physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model.concentration_k_pi",
"description": "Concentration K Pi (source K_Pi). Maps to source symbol `K_Pi`. Units: millimolar. Naming evidence: amount concentration units identify a concentration state."
}
]
},
"title": "Cronwright2002 - Metabolic Control Analysis Glycerol Synthesis Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model",
"parameters": {
"model_path": "data/cronwright_rohwer_prior_2002.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model_state"
],
"from": "physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model.state"
},
{
"to": [
"visualisation.physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model_summary"
],
"from": "physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model_trajectory"
],
"from": "physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model_variable_labels"
],
"from": "physiology_cellml_cronwright_rohwer_prior_2002_cronwrightrohwerprior2002_model.variable_labels"
}
],
"package": "cronwright2002-metabolic-control-analysis-glycerol-synthesis",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Cronwright, Rohwer, Prior, 2002. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagecronwright2002-metabolic-control-analysis-glycerol-synthesis
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother