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This is the model described in the article: Photosynthetic oscillations and the interdependence of photophosphorylation and electron transport as studied by a mathematical model. It can be used to explore systemsbiology rovers1995 photsynthetic oscillations BioModels0000000292 dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_nadp_super",
"label": "Initial Nadp Super",
"maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.initial_nadp_super",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADP`."
},
{
"name": "initial_model_state_adp",
"label": "Initial Model State ADP",
"maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.initial_model_state_adp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ADP`."
},
{
"name": "initial_nadph",
"label": "Initial Nadph",
"maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.initial_nadph",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADPH`."
},
{
"name": "initial_model_state_atp",
"label": "Initial Model State ATP",
"maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.initial_model_state_atp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ATP`."
},
{
"name": "initial_model_state_x",
"label": "Initial Model State X",
"maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.initial_model_state_x",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `X`."
},
{
"name": "initial_model_state_y",
"label": "Initial Model State Y",
"maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.initial_model_state_y",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Y`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.species_labels"
},
{
"name": "nadp_super",
"maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.nadp_super"
},
{
"name": "adp",
"maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.adp"
},
{
"name": "nadph",
"maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.nadph"
},
{
"name": "atp",
"maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.atp"
},
{
"name": "model_state_x",
"maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.model_state_x"
},
{
"name": "model_state_y",
"maps_to": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.model_state_y"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Rovers1995 Photsynthetic Oscillations Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model_state"
],
"from": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model_summary"
],
"from": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model_species_labels"
],
"from": "systemsbiology_sbml_rovers1995_photsynthetic_oscillations_biomd0000000292_model.species_labels"
}
],
"package": "rovers1995-photsynthetic-oscillations",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "This is the model described in the article: Photosynthetic oscillations and the interdependence of photophosphorylation and electron transport as studied by a mathematical model. It can be used to explore systemsbiology rovers1995 photsynthetic oscillations BioModels0000000292 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagerovers1995-photsynthetic-oscillations
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother