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Source-faithful physiology lab for Rattananakul, Lenbury, Krishnamara, Wollkind, 2003. Public controls and outputs are mapped to real source symbols for bone and endocrine physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_concentration_of_parathyroid_hormone",
"label": "Initial Concentration Of Parathyroid Hormone",
"maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.initial_concentration_of_parathyroid_hormone",
"description": "Initial value for Concentration Of Parathyroid Hormone. Maps to source symbol `x`. Units: dimensionless. Naming evidence: source metadata names `x` as `concentration of parathyroid hormone`.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_number_of_osteoblastic_cells",
"label": "Initial Number Of Osteoblastic Cells",
"maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.initial_number_of_osteoblastic_cells",
"description": "Initial value for Number Of Osteoblastic Cells. Maps to source symbol `z`. Units: dimensionless. Naming evidence: source metadata names `z` as `number of osteoblastic cells`.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.variable_labels"
},
{
"name": "concentration_of_parathyroid_hormone",
"label": "Concentration Of Parathyroid Hormone",
"maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.concentration_of_parathyroid_hormone",
"description": "Concentration Of Parathyroid Hormone. Maps to source symbol `x`. Units: dimensionless. Naming evidence: source metadata names `x` as `concentration of parathyroid hormone`."
},
{
"name": "number_of_osteoblastic_cells",
"label": "Number Of Osteoblastic Cells",
"maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.number_of_osteoblastic_cells",
"description": "Number Of Osteoblastic Cells. Maps to source symbol `z`. Units: dimensionless. Naming evidence: source metadata names `z` as `number of osteoblastic cells`."
},
{
"name": "number_of_osteoclastic_cells",
"label": "Number Of Osteoclastic Cells",
"maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.number_of_osteoclastic_cells",
"description": "Number Of Osteoclastic Cells. Maps to source symbol `y`. Units: dimensionless. Naming evidence: source metadata names `y` as `number of osteoclastic cells`."
},
{
"name": "delta",
"label": "Delta",
"maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.delta",
"description": "Delta. Maps to source symbol `delta`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "epsilon",
"label": "Epsilon",
"maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.epsilon",
"description": "Epsilon. Maps to source symbol `epsilon`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "model_parameters_a1",
"label": "Model Parameters A1",
"maps_to": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.model_parameters_a1",
"description": "Model Parameters A1. Maps to source symbol `a1`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Rattananakul2003 - Rattanakul Mathematical Bone Formation Resorption Mediated Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model",
"parameters": {
"model_path": "data/rattananakul_lenbury_krishnamara_wollkind_2003_a.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model_state"
],
"from": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.state"
},
{
"to": [
"visualisation.physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model_summary"
],
"from": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model_trajectory"
],
"from": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model_variable_labels"
],
"from": "physiology_cellml_rattananakul_lenbury_krishnamara_wollkind_2003_rattananakullenburykrishnamarawollkind2003_model.variable_labels"
}
],
"package": "rattananakul2003-rattanakul-mathematical-bone-formation-830c1918",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Rattananakul, Lenbury, Krishnamara, Wollkind, 2003. Public controls and outputs are mapped to real source symbols for bone and endocrine physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagerattananakul2003-rattanakul-mathematical-bone-formation-830c1918
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother