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Single-model lab wrapper for Csikasz-Nagy2006 - Mammalian Cell Cycle model. This model originates from the Cell Cycle Database . It is described in: Analysis of a generic model of eukaryotic cell-cycle regulation.
Manifest
{
"io": {
"inputs": [
{
"name": "apc_c",
"label": "APC/C",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.apc_c",
"description": "Controls APC/C in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.apc_c`."
},
{
"name": "cdc14",
"label": "Cdc14",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cdc14",
"description": "Controls Cdc14 in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cdc14`."
},
{
"name": "total_cdc20_apc_c_activator",
"label": "Total Cdc20 APC/C activator",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.total_cdc20_apc_c_activator",
"description": "Controls Total Cdc20 APC/C activator in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.total_cdc20_apc_c_activator`."
},
{
"name": "phosphorylated_cdc25",
"label": "Phosphorylated Cdc25",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.phosphorylated_cdc25",
"description": "Controls Phosphorylated Cdc25 in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.phosphorylated_cdc25`."
},
{
"name": "inactive_cdh1",
"label": "Inactive Cdh1",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.inactive_cdh1",
"description": "Controls Inactive Cdh1 in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.inactive_cdh1`."
},
{
"name": "total_cyclin_dependent_kinase_inhibitor",
"label": "Total cyclin-dependent kinase inhibitor",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.total_cyclin_dependent_kinase_inhibitor",
"description": "Controls Total cyclin-dependent kinase inhibitor in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.total_cyclin_dependent_kinase_inhibitor`."
}
],
"outputs": [
{
"name": "phosphorylated_apc_c_c",
"label": "Phosphorylated APC/C/C",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.phosphorylated_apc_c_c",
"description": "Tracks Phosphorylated APC/C/C in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.phosphorylated_apc_c_c`."
},
{
"name": "b_type_cyclin_cdk_inhibitor",
"label": "B-type cyclin CDK inhibitor",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.b_type_cyclin_cdk_inhibitor",
"description": "Tracks B-type cyclin CDK inhibitor in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.b_type_cyclin_cdk_inhibitor`."
},
{
"name": "active_cdc20",
"label": "Active Cdc20",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.active_cdc20",
"description": "Tracks Active Cdc20 in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.active_cdc20`."
},
{
"name": "inactive_cdc20",
"label": "Inactive Cdc20",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.inactive_cdc20",
"description": "Tracks Inactive Cdc20 in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.inactive_cdc20`."
},
{
"name": "cdh1_apc_c_activator",
"label": "Cdh1 APC/C activator",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cdh1_apc_c_activator",
"description": "Tracks Cdh1 APC/C activator in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cdh1_apc_c_activator`."
},
{
"name": "cyclin_dependent_kinase_inhibitor",
"label": "Cyclin-dependent kinase inhibitor",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cyclin_dependent_kinase_inhibitor",
"description": "Tracks Cyclin-dependent kinase inhibitor in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cyclin_dependent_kinase_inhibitor`."
},
{
"name": "cyclin_a",
"label": "Cyclin A",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cyclin_a",
"description": "Tracks Cyclin A in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cyclin_a`."
},
{
"name": "cyclin_b",
"label": "Cyclin B",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cyclin_b",
"description": "Tracks Cyclin B in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cyclin_b`."
},
{
"name": "cyclin_e",
"label": "Cyclin E",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cyclin_e",
"description": "Tracks Cyclin E in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cyclin_e`."
},
{
"name": "cell_mass",
"label": "Cell mass",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cell_mass",
"description": "Tracks Cell mass in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.cell_mass`."
},
{
"name": "p_b",
"label": "P B",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.p_b",
"description": "Tracks P B in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.p_b`."
},
{
"name": "p_bcki",
"label": "P BCKI",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.p_bcki",
"description": "Tracks P BCKI in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.p_bcki`."
},
{
"name": "tri_a",
"label": "Tri A",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.tri_a",
"description": "Tracks Tri A in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.tri_a`."
},
{
"name": "tri_e",
"label": "Tri E",
"maps_to": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.tri_e",
"description": "Tracks Tri E in the lab model via `cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.tri_e`."
}
]
},
"title": "Csikasz-Nagy2006 - Mammalian Cell Cycle model Lab",
"models": [
{
"path": "models/core",
"alias": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model_state"
],
"from": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.state"
},
{
"to": [
"visualisation.cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model_summary"
],
"from": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.summary"
},
{
"to": [
"visualisation.cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model_species_labels"
],
"from": "cellcycle_sbml_csikasz_nagy2006_mammalian_cell_cycle_model_biomd0000001044_model.species_labels"
}
],
"package": "csikasznagy2006-mammalian-cell-cycle",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.0",
"description": "Single-model lab wrapper for Csikasz-Nagy2006 - Mammalian Cell Cycle model. This model originates from the Cell Cycle Database . It is described in: Analysis of a generic model of eukaryotic cell-cycle regulation.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagecsikasznagy2006-mammalian-cell-cycle
Created2026-05-15
Updated2026-06-13
cellcyclesbmlbiomodels_ebifaithfulvisualisationother