Nazaret2009_TCA_RC_ATP Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_atp",
        "units": "native SBML value",
        "default": 3.536,
        "maps_to": "metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model.initial_atp",
        "description": "Initial condition for atp. Maps to bundled SBML symbol `ATP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_nad",
        "units": "native SBML value",
        "default": 0.856,
        "maps_to": "metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model.initial_nad",
        "description": "Initial condition for nad. Maps to bundled SBML symbol `NAD`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_mitochondrial_energy_state_3",
        "units": "native SBML value",
        "default": 0.063,
        "maps_to": "metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model.initial_mitochondrial_energy_state_3",
        "description": "Initial condition for mitochondrial energy state 3. Maps to bundled SBML symbol `AcCoA`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_alpha_ketoglutarate",
        "units": "native SBML value",
        "default": 0.225,
        "maps_to": "metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model.initial_alpha_ketoglutarate",
        "description": "Initial condition for alpha ketoglutarate. Maps to bundled SBML symbol `KG`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_mitochondrial_energy_state_5",
        "units": "native SBML value",
        "default": 0.44,
        "maps_to": "metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model.initial_mitochondrial_energy_state_5",
        "description": "Initial condition for mitochondrial energy state 5. Maps to bundled SBML symbol `Cit`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "atp",
        "maps_to": "metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model.atp"
      },
      {
        "name": "nad",
        "maps_to": "metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model.nad"
      },
      {
        "name": "mitochondrial_energy_state_3",
        "maps_to": "metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model.mitochondrial_energy_state_3"
      },
      {
        "name": "alpha_ketoglutarate",
        "maps_to": "metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model.alpha_ketoglutarate"
      },
      {
        "name": "mitochondrial_energy_state_5",
        "maps_to": "metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model.mitochondrial_energy_state_5"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model.observable_labels"
      }
    ]
  },
  "title": "Nazaret2009_TCA_RC_ATP Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model",
      "parameters": {
        "model_path": "data/BIOMD0000000232.xml",
        "integration_step": 0.1
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model_observable_values"
      ],
      "from": "metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model_run_summary"
      ],
      "from": "metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model_observable_labels"
      ],
      "from": "metabolism_sbml_nazaret2009_tca_rc_atp_biomd0000000232_model.observable_labels"
    }
  ],
  "package": "nazaret2009-tca-rc-atp",
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "version": "1.0.0",
  "description": "This a model from the article: Mitochondrial energetic metabolism: a simplified model of TCA cycle with ATP production. Nazaret C, Heiske M, Thurley K, Mazat JP J.",
  "schema_version": "2.0"
}