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Basic PBPK (Physiologically Based PharmacoKinetic) model of Acetaminophen. This is a basic model of Acetaminophen (APAP, Paracetamol) pharmacokinetics in humans.
Manifest
{
"io": {
"inputs": [
{
"name": "acetaminophen_dose_grams",
"label": "Acetaminophen Dose Grams",
"maps_to": "pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model.acetaminophen_dose_grams"
},
{
"name": "initial_gut_lumen_acetaminophen",
"label": "Initial Gut Lumen Acetaminophen",
"maps_to": "pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model.initial_gut_lumen_acetaminophen"
},
{
"name": "initial_liver_acetaminophen_concentration",
"label": "Initial Liver Acetaminophen Concentration",
"maps_to": "pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model.initial_liver_acetaminophen_concentration"
},
{
"name": "initial_metabolized_acetaminophen",
"label": "Initial Metabolized Acetaminophen",
"maps_to": "pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model.initial_metabolized_acetaminophen"
}
],
"outputs": [
{
"name": "state",
"label": "Tracked source state",
"maps_to": "pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model.species_labels"
},
{
"name": "liver_acetaminophen_concentration",
"label": "Liver Acetaminophen Concentration",
"maps_to": "pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model.liver_acetaminophen_concentration"
},
{
"name": "arterial_acetaminophen_concentration",
"label": "Arterial Acetaminophen Concentration",
"maps_to": "pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model.arterial_acetaminophen_concentration"
},
{
"name": "gut_acetaminophen_concentration",
"label": "Gut Acetaminophen Concentration",
"maps_to": "pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model.gut_acetaminophen_concentration"
},
{
"name": "gut_lumen_acetaminophen_amount",
"label": "Gut Lumen Acetaminophen Amount",
"maps_to": "pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model.gut_lumen_acetaminophen_amount"
},
{
"name": "lung_acetaminophen_concentration",
"label": "Lung Acetaminophen Concentration",
"maps_to": "pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model.lung_acetaminophen_concentration"
},
{
"name": "venous_acetaminophen_concentration",
"label": "Venous Acetaminophen Concentration",
"maps_to": "pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model.venous_acetaminophen_concentration"
},
{
"name": "rest_body_acetaminophen_concentration",
"label": "Rest Body Acetaminophen Concentration",
"maps_to": "pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model.rest_body_acetaminophen_concentration"
},
{
"name": "metabolized_acetaminophen_concentration",
"label": "Metabolized Acetaminophen Concentration",
"maps_to": "pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model.metabolized_acetaminophen_concentration"
}
]
},
"tags": [
"pharmacology",
"pbpk",
"pharmacokinetics",
"toxicology",
"liver",
"sbml",
"tellurium",
"faithful",
"biomodels_ebi"
],
"title": "Sluka2016 - Acetaminophen PBPK Lab",
"models": [
{
"path": "models/core",
"alias": "pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model",
"parameters": {
"model_path": "data/BIOMD0000000619.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model_state"
],
"from": "pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model.state"
},
{
"to": [
"visualisation.pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model_summary"
],
"from": "pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model.summary"
},
{
"to": [
"visualisation.pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model_species_labels"
],
"from": "pharmacology_sbml_sluka2016_acetaminophen_pbpk_biomd0000000619_model.species_labels"
}
],
"package": "sluka2016-acetaminophen-pbpk",
"runtime": {
"duration": 24,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.0",
"description": "Basic PBPK (Physiologically Based PharmacoKinetic) model of Acetaminophen. This is a basic model of Acetaminophen (APAP, Paracetamol) pharmacokinetics in humans.",
"schema_version": "2.0"
}Runtime
Duration24
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagesluka2016-acetaminophen-pbpk
Created2026-05-16
Updated2026-06-13
pharmacologypbpkpharmacokineticstoxicologyliversbmltelluriumfaithfulbiomodels_ebivisualisationother