About lab
One published Lab
Build with this Lab. Run it anywhere.
Use the same immutable release locally or through managed cloud execution, with its exact version and provenance preserved.
Preparing exact examples…
Sass2009 - Approach to anα-synuclein-based BST model of Parkinson's disease This model is described in the article: A pragmatic approach to biochemical systems theory applied to an alpha-synuclein-bas. It can be used to explore systemsbiology sass2009 approach to an synuclein dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_nad",
"label": "Initial Model State Nad",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.initial_model_state_nad",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NAD`."
},
{
"name": "initial_model_state_atp",
"label": "Initial Model State ATP",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.initial_model_state_atp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ATP`."
},
{
"name": "initial_nadh",
"label": "Initial Nadh",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.initial_nadh",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NADH`."
},
{
"name": "initial_v_da",
"label": "Initial V Da",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.initial_v_da",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `V_DA`."
},
{
"name": "initial_l_tyr",
"label": "Initial L Tyr",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.initial_l_tyr",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `L_Tyr`."
},
{
"name": "initial_parkin_synphilin_1_ub",
"label": "Initial Parkin Synphilin 1 Ub",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.initial_parkin_synphilin_1_ub",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Parkin_synphilin_1_ub`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.species_labels"
},
{
"name": "nad",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.nad"
},
{
"name": "atp",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.atp"
},
{
"name": "nadh",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.nadh"
},
{
"name": "v_da",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.v_da"
},
{
"name": "l_tyr",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.l_tyr"
},
{
"name": "parkin_synphilin_1_ub",
"maps_to": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.parkin_synphilin_1_ub"
}
]
},
"tags": [
"neuroscience",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Sass2009 Approach To An Synuclein Based Bst Model Of Parkinson S Di Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model_state"
],
"from": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model_summary"
],
"from": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model_species_labels"
],
"from": "systemsbiology_sbml_sass2009_approach_to_an_synuclein_based_bst_mode_biomd0000000575_model.species_labels"
}
],
"package": "sass2009-approach-to-an-synuclein-based-bst-model-of-pa-4d756122",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Sass2009 - Approach to anα-synuclein-based BST model of Parkinson's disease This model is described in the article: A pragmatic approach to biochemical systems theory applied to an alpha-synuclein-bas. It can be used to explore systemsbiology sass2009 approach to an synuclein dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagesass2009-approach-to-an-synuclein-based-bst-model-of-pa-4d756122
Created2026-05-17
Updated2026-06-13
neurosciencesystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother