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Source-faithful physiology lab for Sriram, Bernot, Kepes, 2007. Public controls and outputs are mapped to real source symbols for source-model physiology.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_c_1_concentration",
"label": "Initial C 1 Concentration",
"maps_to": "physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model.initial_c_1_concentration",
"description": "Initial value for C 1 Concentration. Maps to source symbol `C_1`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"nanomolar"
]
},
{
"name": "initial_c_2_concentration",
"label": "Initial C 2 Concentration",
"maps_to": "physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model.initial_c_2_concentration",
"description": "Initial value for C 2 Concentration. Maps to source symbol `C_2`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"nanomolar"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model.variable_labels"
},
{
"name": "c_1_concentration",
"label": "C 1 Concentration",
"maps_to": "physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model.c_1_concentration",
"description": "C 1 Concentration. Maps to source symbol `C_1`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "c_2_concentration",
"label": "C 2 Concentration",
"maps_to": "physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model.c_2_concentration",
"description": "C 2 Concentration. Maps to source symbol `C_2`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "c_3_concentration",
"label": "C 3 Concentration",
"maps_to": "physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model.c_3_concentration",
"description": "C 3 Concentration. Maps to source symbol `C_3`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "concentration_t_1",
"label": "Concentration T 1 (source T_1)",
"maps_to": "physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model.concentration_t_1",
"description": "Concentration T 1 (source T_1). Maps to source symbol `T_1`. Units: nanomolar. Naming evidence: amount concentration units identify a concentration state."
},
{
"name": "concentration_t_2",
"label": "Concentration T 2 (source T_2)",
"maps_to": "physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model.concentration_t_2",
"description": "Concentration T 2 (source T_2). Maps to source symbol `T_2`. Units: nanomolar. Naming evidence: amount concentration units identify a concentration state."
},
{
"name": "concentration_t_3",
"label": "Concentration T 3 (source T_3)",
"maps_to": "physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model.concentration_t_3",
"description": "Concentration T 3 (source T_3). Maps to source symbol `T_3`. Units: nanomolar. Naming evidence: amount concentration units identify a concentration state."
}
]
},
"title": "Sriram2007 - Minimal Mathematical Combining Several Regulatory Cycles Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model",
"parameters": {
"model_path": "data/sriram_bernot_kepes_2007.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model_state"
],
"from": "physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model.state"
},
{
"to": [
"visualisation.physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model_summary"
],
"from": "physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model_trajectory"
],
"from": "physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model_variable_labels"
],
"from": "physiology_cellml_sriram_bernot_kepes_2007_srirambernotkepes2007_model.variable_labels"
}
],
"package": "sriram2007-minimal-mathematical-combining-several-regul-cea3a709",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Sriram, Bernot, Kepes, 2007. Public controls and outputs are mapped to real source symbols for source-model physiology.",
"schema_version": "2.0"
}Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagesriram2007-minimal-mathematical-combining-several-regul-cea3a709
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother