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Preparing exact examples…
As per BIO0000000089.xml but including a functional light. It can be used to explore systemsbiology adams2012 locke2006 circadian rhythm refin dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "light_amplitude",
"label": "Light Amplitude",
"maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.light_amplitude",
"description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `lightAmplitude`."
},
{
"name": "light_offset",
"label": "Light Offset",
"maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.light_offset",
"description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `lightOffset`."
},
{
"name": "twilight_period",
"label": "Twilight Period",
"maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.twilight_period",
"description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `twilightPeriod`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.species_labels"
},
{
"name": "ppr7_9_mrna",
"maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.ppr7_9_mrna"
},
{
"name": "toc1_protein_in_cytoplasm",
"maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.toc1_protein_in_cytoplasm"
},
{
"name": "x_protein_in_cytoplasm",
"maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.x_protein_in_cytoplasm"
},
{
"name": "ppr7_9_protein_in_nucleus",
"maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.ppr7_9_protein_in_nucleus"
},
{
"name": "light_sensitive_protein_p",
"maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.light_sensitive_protein_p"
},
{
"name": "ppr7_9_protein_in_cytoplasm",
"maps_to": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.ppr7_9_protein_in_cytoplasm"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Adams2012 Locke2006 Circadian Rhythm Model Refined With Input Signal Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model_state"
],
"from": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model_summary"
],
"from": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model_species_labels"
],
"from": "systemsbiology_sbml_adams2012_locke2006_circadian_rhythm_model_refin_biomd0000000476_model.species_labels"
}
],
"package": "adams2012-locke2006-circadian-rhythm-model-refined-with-b5256878",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "As per BIO0000000089.xml but including a functional light. It can be used to explore systemsbiology adams2012 locke2006 circadian rhythm refin dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageadams2012-locke2006-circadian-rhythm-model-refined-with-b5256878
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother