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Clean Biosimulant lab for systems signaling model: Brown2004 - NGF and EGF signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_source_defined_kegf_state_level",
"label": "source-defined KEGF state",
"maps_to": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.initial_source_defined_kegf_state_level",
"description": "source-defined KEGF state source parameter. Maps to SBML symbol `kEGF` and preserves the bundled default."
},
{
"name": "initial_km_egf_level",
"label": "Km EGF",
"maps_to": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.initial_km_egf_level",
"description": "Km EGF source parameter. Maps to SBML symbol `KmEGF` and preserves the bundled default."
},
{
"name": "initial_krb_egf_level",
"label": "Krb EGF",
"maps_to": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.initial_krb_egf_level",
"description": "Krb EGF source parameter. Maps to SBML symbol `krbEGF` and preserves the bundled default."
}
],
"outputs": [
{
"name": "free_egfreceptor",
"label": "free Egfreceptor",
"maps_to": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.free_egfreceptor",
"description": "free Egfreceptor. Maps to SBML symbol `freeEGFReceptor` and is emitted in native SBML units."
},
{
"name": "bound_egfreceptor",
"label": "bound Egfreceptor",
"maps_to": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.bound_egfreceptor",
"description": "bound Egfreceptor. Maps to SBML symbol `boundEGFReceptor` and is emitted in native SBML units."
},
{
"name": "free_ngfreceptor",
"label": "free Ngfreceptor",
"maps_to": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.free_ngfreceptor",
"description": "free Ngfreceptor. Maps to SBML symbol `freeNGFReceptor` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"neuroscience"
],
"title": "Brown2004 - NGF and EGF signaling Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model_state"
],
"from": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.state"
},
{
"to": [
"visualisation.signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model_summary"
],
"from": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model_species_labels"
],
"from": "signaling_sbml_brown2004_ngf_and_egf_signaling_biomd0000000033_model.species_labels"
}
],
"package": "brown2004-ngf-and-egf-signaling",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for systems signaling model: Brown2004 - NGF and EGF signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebrown2004-ngf-and-egf-signaling
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebineurosciencevisualisationother