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Curated microbiology lab for Kuwahara2010_Fimbriation_Switch_42C. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_fime_site_recombinase",
"maps_to": "kuwahara2010_fimbriation_switch_42c.initial_fime_site_recombinase"
},
{
"name": "initial_fimb_site_recombinase",
"maps_to": "kuwahara2010_fimbriation_switch_42c.initial_fimb_site_recombinase"
}
],
"outputs": [
{
"name": "state",
"maps_to": "kuwahara2010_fimbriation_switch_42c.state"
},
{
"name": "summary",
"maps_to": "kuwahara2010_fimbriation_switch_42c.summary"
},
{
"name": "species_labels",
"maps_to": "kuwahara2010_fimbriation_switch_42c.species_labels"
},
{
"name": "fime_site_recombinase",
"maps_to": "kuwahara2010_fimbriation_switch_42c.fime_site_recombinase"
},
{
"name": "fimb_site_recombinase",
"maps_to": "kuwahara2010_fimbriation_switch_42c.fimb_site_recombinase"
},
{
"name": "leucine_responsive_regulatory_protein",
"maps_to": "kuwahara2010_fimbriation_switch_42c.leucine_responsive_regulatory_protein"
},
{
"name": "integration_host_factor",
"maps_to": "kuwahara2010_fimbriation_switch_42c.integration_host_factor"
}
]
},
"title": "Kuwahara2010_Fimbriation_Switch_42C Lab",
"models": [
{
"path": "models/core",
"alias": "kuwahara2010_fimbriation_switch_42c"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.kuwahara2010_fimbriation_switch_42c_state"
],
"from": "kuwahara2010_fimbriation_switch_42c.state"
},
{
"to": [
"visualisation.kuwahara2010_fimbriation_switch_42c_summary"
],
"from": "kuwahara2010_fimbriation_switch_42c.summary"
},
{
"to": [
"visualisation.kuwahara2010_fimbriation_switch_42c_species_labels"
],
"from": "kuwahara2010_fimbriation_switch_42c.species_labels"
},
{
"to": [
"visualisation.kuwahara2010_fimbriation_switch_42c_fime_site_recombinase"
],
"from": "kuwahara2010_fimbriation_switch_42c.fime_site_recombinase"
},
{
"to": [
"visualisation.kuwahara2010_fimbriation_switch_42c_fimb_site_recombinase"
],
"from": "kuwahara2010_fimbriation_switch_42c.fimb_site_recombinase"
},
{
"to": [
"visualisation.kuwahara2010_fimbriation_switch_42c_leucine_responsive_regulatory_protein"
],
"from": "kuwahara2010_fimbriation_switch_42c.leucine_responsive_regulatory_protein"
},
{
"to": [
"visualisation.kuwahara2010_fimbriation_switch_42c_integration_host_factor"
],
"from": "kuwahara2010_fimbriation_switch_42c.integration_host_factor"
}
],
"package": "kuwahara2010-fimbriation-switch-42c",
"runtime": {
"duration": 2,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Curated microbiology lab for Kuwahara2010_Fimbriation_Switch_42C. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
"schema_version": "2.0"
}Runtime
Duration2
Comms Step0.01
Runs
Total0
Completed0
Failed0
Metadata
Packagekuwahara2010-fimbriation-switch-42c
Created2026-05-15
Updated2026-06-13
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisationother