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Heldt2018 - Proliferation-quiescence decisionin response to DNA damage This model is described in the article: A comprehensive model for the proliferation-quiescence decision in response to endogenous. It can be used to explore systemsbiology heldt2018 proliferation quiescence decision in dynamics and compare simulation behavior across conditions.
Manifest
{
"io": {
"inputs": [
{
"name": "initial_cyclin_a_cdk2_total",
"label": "Initial Cyclin A Cdk2 Total",
"maps_to": "systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model.initial_cyclin_a_cdk2_total",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `tCa`."
},
{
"name": "initial_retinoblastoma_protein_total",
"label": "Initial Retinoblastoma Protein Total",
"maps_to": "systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model.initial_retinoblastoma_protein_total",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `tRb`."
},
{
"name": "initial_retinoblastoma_protein_hyperphosphorylated",
"label": "Initial Retinoblastoma Protein Hyperphosphorylated",
"maps_to": "systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model.initial_retinoblastoma_protein_hyperphosphorylated",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `pRb`."
},
{
"name": "initial_cyclin_a_cdk2",
"label": "Initial Cyclin A Cdk2",
"maps_to": "systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model.initial_cyclin_a_cdk2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ca`."
},
{
"name": "initial_cyclin_e_cdk2_total",
"label": "Initial Cyclin E Cdk2 Total",
"maps_to": "systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model.initial_cyclin_e_cdk2_total",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `tCe`."
},
{
"name": "initial_cyclin_e_cdk2_active",
"label": "Initial Cyclin E Cdk2 Active",
"maps_to": "systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model.initial_cyclin_e_cdk2_active",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ce`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model.species_labels"
},
{
"name": "cyclin_a_cdk2_total",
"maps_to": "systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model.cyclin_a_cdk2_total"
},
{
"name": "retinoblastoma_protein_total",
"maps_to": "systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model.retinoblastoma_protein_total"
},
{
"name": "retinoblastoma_protein_hyperphosphorylated",
"maps_to": "systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model.retinoblastoma_protein_hyperphosphorylated"
},
{
"name": "cyclin_a_cdk2",
"maps_to": "systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model.cyclin_a_cdk2"
},
{
"name": "cyclin_e_cdk2_total",
"maps_to": "systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model.cyclin_e_cdk2_total"
},
{
"name": "cyclin_e_cdk2_active",
"maps_to": "systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model.cyclin_e_cdk2_active"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Heldt2018 Proliferation Quiescence Decision In Response To Dna Damag Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model_state"
],
"from": "systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model_summary"
],
"from": "systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model_species_labels"
],
"from": "systemsbiology_sbml_heldt2018_proliferation_quiescence_decision_in_r_biomd0000000700_model.species_labels"
}
],
"package": "heldt2018-proliferation-quiescence-decision-in-response-2290bccb",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Heldt2018 - Proliferation-quiescence decisionin response to DNA damage This model is described in the article: A comprehensive model for the proliferation-quiescence decision in response to endogenous. It can be used to explore systemsbiology heldt2018 proliferation quiescence decision in dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
}Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageheldt2018-proliferation-quiescence-decision-in-response-2290bccb
Created2026-05-17
Updated2026-06-13
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother