Cui2006 - Kaandorp Mathematical Calcium Homeostasis Yeast Cells Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_activated_calcineurin",
        "label": "Initial Activated Calcineurin",
        "maps_to": "physiology_cellml_cui_kaandorp_2006_354_model.initial_activated_calcineurin",
        "description": "Initial value for Activated Calcineurin. Maps to source symbol `z`. Units: micromolar. Naming evidence: source metadata names `z` as `activated calcineurin`.",
        "accepted_units": [
          "micromolar"
        ]
      },
      {
        "name": "initial_ca_bound_calmodulin",
        "label": "Initial Ca Bound Calmodulin",
        "maps_to": "physiology_cellml_cui_kaandorp_2006_354_model.initial_ca_bound_calmodulin",
        "description": "Initial value for Ca Bound Calmodulin. Maps to source symbol `m`. Units: micromolar. Naming evidence: source metadata names `m` as `Ca-bound calmodulin`.",
        "accepted_units": [
          "micromolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_cui_kaandorp_2006_354_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_cui_kaandorp_2006_354_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_cui_kaandorp_2006_354_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_cui_kaandorp_2006_354_model.variable_labels"
      },
      {
        "name": "alpha",
        "label": "Alpha",
        "maps_to": "physiology_cellml_cui_kaandorp_2006_354_model.alpha",
        "description": "Alpha. Maps to source symbol `alpha`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "phi",
        "label": "Phi",
        "maps_to": "physiology_cellml_cui_kaandorp_2006_354_model.phi",
        "description": "Phi. Maps to source symbol `phi`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "activated_calcineurin",
        "label": "Activated Calcineurin",
        "maps_to": "physiology_cellml_cui_kaandorp_2006_354_model.activated_calcineurin",
        "description": "Activated Calcineurin. Maps to source symbol `z`. Units: micromolar. Naming evidence: source metadata names `z` as `activated calcineurin`."
      },
      {
        "name": "ca_bound_calmodulin",
        "label": "Ca Bound Calmodulin",
        "maps_to": "physiology_cellml_cui_kaandorp_2006_354_model.ca_bound_calmodulin",
        "description": "Ca Bound Calmodulin. Maps to source symbol `m`. Units: micromolar. Naming evidence: source metadata names `m` as `Ca-bound calmodulin`."
      },
      {
        "name": "cytosolic_calcium",
        "label": "Cytosolic Calcium",
        "maps_to": "physiology_cellml_cui_kaandorp_2006_354_model.cytosolic_calcium",
        "description": "Cytosolic Calcium. Maps to source symbol `x`. Units: micromolar. Naming evidence: source metadata names `x` as `cytosolic calcium`."
      },
      {
        "name": "nuclear_fraction_of_crz1p",
        "label": "Nuclear Fraction Of Crz1p",
        "maps_to": "physiology_cellml_cui_kaandorp_2006_354_model.nuclear_fraction_of_crz1p",
        "description": "Nuclear Fraction Of Crz1p. Maps to source symbol `h`. Units: dimensionless. Naming evidence: source metadata names `h` as `nuclear fraction of Crz1p`."
      }
    ]
  },
  "title": "Cui2006 - Kaandorp Mathematical Calcium Homeostasis Yeast Cells Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_cui_kaandorp_2006_354_model",
      "parameters": {
        "model_path": "data/cui_kaandorp_2006.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_cui_kaandorp_2006_354_model_state"
      ],
      "from": "physiology_cellml_cui_kaandorp_2006_354_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_cui_kaandorp_2006_354_model_summary"
      ],
      "from": "physiology_cellml_cui_kaandorp_2006_354_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_cui_kaandorp_2006_354_model_trajectory"
      ],
      "from": "physiology_cellml_cui_kaandorp_2006_354_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_cui_kaandorp_2006_354_model_variable_labels"
      ],
      "from": "physiology_cellml_cui_kaandorp_2006_354_model.variable_labels"
    }
  ],
  "package": "cui2006-kaandorp-mathematical-calcium-homeostasis-yeast-cells",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.0",
  "description": "Source-faithful physiology lab for Cui, Kaandorp, 2006. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}