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Mesenchymal progenitor fate model for osteoblast or chondrocyte differentiation executed directly from SBML.
Manifest
{
"io": {
"inputs": [
{
"name": "starting_progenitor_cells",
"label": "Starting progenitor cells",
"units": "native SBML value",
"default": 12.03,
"maps_to": "schittler2010_progenitor_fate.starting_progenitor_cells",
"description": "Setup-time initial progenitor-cell state. Maps to SBML symbol `P`."
},
{
"name": "starting_bone_fate_cells",
"label": "Starting bone-fate cells",
"units": "native SBML value",
"default": 0.14,
"maps_to": "schittler2010_progenitor_fate.starting_bone_fate_cells",
"description": "Setup-time initial osteoblast or bone-fate cell state. Maps to SBML symbol `O`."
},
{
"name": "starting_cartilage_fate_cells",
"label": "Starting cartilage-fate cells",
"units": "native SBML value",
"default": 0.14,
"maps_to": "schittler2010_progenitor_fate.starting_cartilage_fate_cells",
"description": "Setup-time initial chondrocyte or cartilage-fate cell state. Maps to SBML symbol `C`."
}
],
"outputs": [
{
"name": "progenitor_cells",
"label": "Progenitor cells",
"maps_to": "schittler2010_progenitor_fate.progenitor_cells",
"description": "Progenitor cells. Maps to SBML symbol `P`."
},
{
"name": "osteoblast_cells",
"label": "Osteoblast cells",
"maps_to": "schittler2010_progenitor_fate.osteoblast_cells",
"description": "Osteoblast cells. Maps to SBML symbol `O`."
},
{
"name": "chondrocyte_cells",
"label": "Chondrocyte cells",
"maps_to": "schittler2010_progenitor_fate.chondrocyte_cells",
"description": "Chondrocyte cells. Maps to SBML symbol `C`."
},
{
"name": "state",
"maps_to": "schittler2010_progenitor_fate.state",
"description": "Full friendly observable record."
},
{
"name": "summary",
"maps_to": "schittler2010_progenitor_fate.summary",
"description": "Core model run summary."
},
{
"name": "species_labels",
"maps_to": "schittler2010_progenitor_fate.species_labels",
"description": "Friendly observable display labels."
}
]
},
"title": "Schittler2010 Progenitor Cell Fate Lab",
"models": [
{
"path": "models/core",
"alias": "schittler2010_progenitor_fate",
"parameters": {
"model_path": "data/BIOMD0000000493.xml",
"integration_step": 0.1
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.core_state"
],
"from": "schittler2010_progenitor_fate.state"
},
{
"to": [
"visualisation.core_summary"
],
"from": "schittler2010_progenitor_fate.summary"
},
{
"to": [
"visualisation.core_species_labels"
],
"from": "schittler2010_progenitor_fate.species_labels"
}
],
"package": "schittler2010-progenitor-cell-fate",
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"version": "1.0.0",
"description": "Mesenchymal progenitor fate model for osteoblast or chondrocyte differentiation executed directly from SBML.",
"schema_version": "2.0"
}Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packageschittler2010-progenitor-cell-fate
Created2026-05-15
Updated2026-06-13
developmentsbmltelluriumfaithfulvisualisationother