Yates2007 - Mathematical Slow Depletion Memory T Cells Hiv Infection Lab

{
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    "inputs": [
      {
        "name": "initial_dividing_cd4_positive_t_cells",
        "label": "Initial Dividing CD4 Positive T Cells",
        "maps_to": "physiology_cellml_yates_stark_klein_antia_callard_2007_yatesstarkkleinantiacallard2007_model.initial_dividing_cd4_positive_t_cells",
        "description": "Initial value for Dividing CD4 Positive T Cells. Maps to source symbol `y`. Units: dimensionless. Naming evidence: source metadata names `y` as `dividing CD4+ T cells`.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_resting_memory_cd4_positive_t_cells",
        "label": "Initial Resting Memory CD4 Positive T Cells",
        "maps_to": "physiology_cellml_yates_stark_klein_antia_callard_2007_yatesstarkkleinantiacallard2007_model.initial_resting_memory_cd4_positive_t_cells",
        "description": "Initial value for Resting Memory CD4 Positive T Cells. Maps to source symbol `x`. Units: dimensionless. Naming evidence: source metadata names `x` as `resting memory CD4+ T cells`.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_yates_stark_klein_antia_callard_2007_yatesstarkkleinantiacallard2007_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_yates_stark_klein_antia_callard_2007_yatesstarkkleinantiacallard2007_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_yates_stark_klein_antia_callard_2007_yatesstarkkleinantiacallard2007_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_yates_stark_klein_antia_callard_2007_yatesstarkkleinantiacallard2007_model.variable_labels"
      },
      {
        "name": "dividing_cd4_positive_t_cells",
        "label": "Dividing CD4 Positive T Cells",
        "maps_to": "physiology_cellml_yates_stark_klein_antia_callard_2007_yatesstarkkleinantiacallard2007_model.dividing_cd4_positive_t_cells",
        "description": "Dividing CD4 Positive T Cells. Maps to source symbol `y`. Units: dimensionless. Naming evidence: source metadata names `y` as `dividing CD4+ T cells`."
      },
      {
        "name": "resting_memory_cd4_positive_t_cells",
        "label": "Resting Memory CD4 Positive T Cells",
        "maps_to": "physiology_cellml_yates_stark_klein_antia_callard_2007_yatesstarkkleinantiacallard2007_model.resting_memory_cd4_positive_t_cells",
        "description": "Resting Memory CD4 Positive T Cells. Maps to source symbol `x`. Units: dimensionless. Naming evidence: source metadata names `x` as `resting memory CD4+ T cells`."
      },
      {
        "name": "kappa",
        "label": "Kappa",
        "maps_to": "physiology_cellml_yates_stark_klein_antia_callard_2007_yatesstarkkleinantiacallard2007_model.kappa",
        "description": "Kappa. Maps to source symbol `kappa`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_parameters_a",
        "label": "Model Parameters A",
        "maps_to": "physiology_cellml_yates_stark_klein_antia_callard_2007_yatesstarkkleinantiacallard2007_model.model_parameters_a",
        "description": "Model Parameters A. Maps to source symbol `a`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_parameters_d1",
        "label": "Model Parameters D1",
        "maps_to": "physiology_cellml_yates_stark_klein_antia_callard_2007_yatesstarkkleinantiacallard2007_model.model_parameters_d1",
        "description": "Model Parameters D1. Maps to source symbol `d1`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_parameters_d2",
        "label": "Model Parameters D2",
        "maps_to": "physiology_cellml_yates_stark_klein_antia_callard_2007_yatesstarkkleinantiacallard2007_model.model_parameters_d2",
        "description": "Model Parameters D2. Maps to source symbol `d2`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Yates2007 - Mathematical Slow Depletion Memory T Cells Hiv Infection Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_yates_stark_klein_antia_callard_2007_yatesstarkkleinantiacallard2007_model",
      "parameters": {
        "model_path": "data/yates_stark_klein_antia_callard_2007_a.cellml",
        "integration_step": 0.01
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    {
      "path": "models/visualisation",
      "alias": "visualisation"
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  "wiring": [
    {
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      "from": "physiology_cellml_yates_stark_klein_antia_callard_2007_yatesstarkkleinantiacallard2007_model.state"
    },
    {
      "to": [
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      "from": "physiology_cellml_yates_stark_klein_antia_callard_2007_yatesstarkkleinantiacallard2007_model.summary"
    },
    {
      "to": [
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      ],
      "from": "physiology_cellml_yates_stark_klein_antia_callard_2007_yatesstarkkleinantiacallard2007_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_yates_stark_klein_antia_callard_2007_yatesstarkkleinantiacallard2007_model_variable_labels"
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      "from": "physiology_cellml_yates_stark_klein_antia_callard_2007_yatesstarkkleinantiacallard2007_model.variable_labels"
    }
  ],
  "package": "yates2007-mathematical-slow-depletion-memory-t-cells-hi-9ec0b188",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.0",
  "description": "Source-faithful physiology lab for Yates, Stark, Klein, Antia, Callard, 2007. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}